FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6910, 224 aa
  1>>>pF1KB6910 224 - 224 aa - 224 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8083+/-0.000499; mu= 4.5668+/- 0.031
 mean_var=196.9103+/-38.280, 0's: 0 Z-trim(113.7): 17  B-trim: 25 in 1/52
 Lambda= 0.091399
 statistics sampled from 23194 (23210) to 23194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.272), width:  16
 Scan time:  5.740

The best scores are:                                      opt bits E(85289)
NP_065726 (OMIM: 609395) kinetochore protein Spc25 ( 224) 1415 198.7 6.4e-51
XP_011509818 (OMIM: 609395) PREDICTED: kinetochore ( 186) 1159 164.9 8.1e-41


>>NP_065726 (OMIM: 609395) kinetochore protein Spc25 [Ho  (224 aa)
 initn: 1415 init1: 1415 opt: 1415  Z-score: 1035.2  bits: 198.7 E(85289): 6.4e-51
Smith-Waterman score: 1415; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB6 MVEDELALFDKSINEFWNKFKSTDTSCQMAGLRDTYKDSIKAFAEKLSVKLKEEERMVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MVEDELALFDKSINEFWNKFKSTDTSCQMAGLRDTYKDSIKAFAEKLSVKLKEEERMVEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEYQNQISRQNKLIQEKKDNLLKLIAEVKGKKQELEVLTANIQDLKEEYSRKKETISTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FLEYQNQISRQNKLIQEKKDNLLKLIAEVKGKKQELEVLTANIQDLKEEYSRKKETISTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEAR
              130       140       150       160       170       180

              190       200       210       220    
pF1KB6 DYEVSDSAPHLEGLAEFQENVRKTNNFSAFLANVRKAFTATVYN
       ::::::::::::::::::::::::::::::::::::::::::::
NP_065 DYEVSDSAPHLEGLAEFQENVRKTNNFSAFLANVRKAFTATVYN
              190       200       210       220    

>>XP_011509818 (OMIM: 609395) PREDICTED: kinetochore pro  (186 aa)
 initn: 1159 init1: 1159 opt: 1159  Z-score: 853.8  bits: 164.9 E(85289): 8.1e-41
Smith-Waterman score: 1159; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB6 MVEDELALFDKSINEFWNKFKSTDTSCQMAGLRDTYKDSIKAFAEKLSVKLKEEERMVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVEDELALFDKSINEFWNKFKSTDTSCQMAGLRDTYKDSIKAFAEKLSVKLKEEERMVEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEYQNQISRQNKLIQEKKDNLLKLIAEVKGKKQELEVLTANIQDLKEEYSRKKETISTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLEYQNQISRQNKLIQEKKDNLLKLIAEVKGKKQELEVLTANIQDLKEEYSRKKETISTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEAR
              130       140       150       160       170       180

              190       200       210       220    
pF1KB6 DYEVSDSAPHLEGLAEFQENVRKTNNFSAFLANVRKAFTATVYN
       ::: :                                       
XP_011 DYEGSA                                      
                                                   




224 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:11:47 2016 done: Sat Nov  5 20:11:47 2016
 Total Scan time:  5.740 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]