FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6916, 225 aa
  1>>>pF1KB6916 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8518+/- 0.001; mu= 6.7766+/- 0.060
 mean_var=104.1819+/-20.658, 0's: 0 Z-trim(106.2): 24  B-trim: 5 in 1/51
 Lambda= 0.125654
 statistics sampled from 8864 (8874) to 8864 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS874.1 BCAS2 gene_id:10286|Hs108|chr1           ( 225) 1484 279.4 1.3e-75


>>CCDS874.1 BCAS2 gene_id:10286|Hs108|chr1                (225 aa)
 initn: 1484 init1: 1484 opt: 1484  Z-score: 1471.0  bits: 279.4 E(32554): 1.3e-75
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB6 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
              130       140       150       160       170       180

              190       200       210       220     
pF1KB6 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF
              190       200       210       220     




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:57:25 2016 done: Fri Nov  4 12:57:25 2016
 Total Scan time:  1.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]