FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6917, 205 aa
  1>>>pF1KB6917 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2881+/-0.000568; mu= 9.8615+/- 0.034
 mean_var=90.9445+/-18.453, 0's: 0 Z-trim(115.2): 2  B-trim: 0 in 0/53
 Lambda= 0.134489
 statistics sampled from 15707 (15708) to 15707 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.483), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS32368.1 GFER gene_id:2671|Hs108|chr16          ( 205) 1501 300.1 6.4e-82


>>CCDS32368.1 GFER gene_id:2671|Hs108|chr16               (205 aa)
 initn: 1501 init1: 1501 opt: 1501  Z-score: 1584.2  bits: 300.1 E(32554): 6.4e-82
Smith-Waterman score: 1501; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB6 MAAPGERGRFHGGNLFFLPGGARSEMMDDLATDARGRGAGRRDAAASASTPAQAPTSDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAPGERGRFHGGNLFFLPGGARSEMMDDLATDARGRGAGRRDAAASASTPAQAPTSDSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VAEDASRRRPCRACVDFKTWMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VAEDASRRRPCRACVDFKTWMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRK
              130       140       150       160       170       180

              190       200     
pF1KB6 LGKPDFDCSKVDERWRDGWKDGSCD
       :::::::::::::::::::::::::
CCDS32 LGKPDFDCSKVDERWRDGWKDGSCD
              190       200     




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:53:20 2016 done: Fri Nov  4 12:53:21 2016
 Total Scan time:  2.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]