FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6917, 205 aa
  1>>>pF1KB6917 205 - 205 aa - 205 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3604+/-0.000251; mu= 15.0287+/- 0.016
 mean_var=86.6049+/-17.561, 0's: 0 Z-trim(122.2): 1  B-trim: 0 in 0/55
 Lambda= 0.137817
 statistics sampled from 39880 (39881) to 39880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.468), width:  16
 Scan time:  6.700

The best scores are:                                      opt bits E(85289)
NP_005253 (OMIM: 600924,613076) FAD-linked sulfhyd ( 205) 1501 307.1 1.3e-83


>>NP_005253 (OMIM: 600924,613076) FAD-linked sulfhydryl   (205 aa)
 initn: 1501 init1: 1501 opt: 1501  Z-score: 1622.0  bits: 307.1 E(85289): 1.3e-83
Smith-Waterman score: 1501; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB6 MAAPGERGRFHGGNLFFLPGGARSEMMDDLATDARGRGAGRRDAAASASTPAQAPTSDSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAPGERGRFHGGNLFFLPGGARSEMMDDLATDARGRGAGRRDAAASASTPAQAPTSDSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VAEDASRRRPCRACVDFKTWMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VAEDASRRRPCRACVDFKTWMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRK
              130       140       150       160       170       180

              190       200     
pF1KB6 LGKPDFDCSKVDERWRDGWKDGSCD
       :::::::::::::::::::::::::
NP_005 LGKPDFDCSKVDERWRDGWKDGSCD
              190       200     




205 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:53:21 2016 done: Fri Nov  4 12:53:22 2016
 Total Scan time:  6.700 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]