FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6919, 217 aa
  1>>>pF1KB6919 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9891+/-0.00092; mu= 7.0708+/- 0.055
 mean_var=125.6130+/-25.574, 0's: 0 Z-trim(109.4): 21  B-trim: 68 in 1/51
 Lambda= 0.114434
 statistics sampled from 10831 (10840) to 10831 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.333), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS45688.1 PSMC3IP gene_id:29893|Hs108|chr17      ( 217) 1405 242.5 1.5e-64
CCDS59289.1 PSMC3IP gene_id:29893|Hs108|chr17      ( 154) 1008 176.9 6.2e-45
CCDS11431.1 PSMC3IP gene_id:29893|Hs108|chr17      ( 205)  737 132.2 2.3e-31


>>CCDS45688.1 PSMC3IP gene_id:29893|Hs108|chr17           (217 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1272.3  bits: 242.5 E(32554): 1.5e-64
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB6 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
              130       140       150       160       170       180

              190       200       210       
pF1KB6 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
       :::::::::::::::::::::::::::::::::::::
CCDS45 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
              190       200       210       

>>CCDS59289.1 PSMC3IP gene_id:29893|Hs108|chr17           (154 aa)
 initn: 1008 init1: 1008 opt: 1008  Z-score: 920.2  bits: 176.9 E(32554): 6.2e-45
Smith-Waterman score: 1008; 100.0% identity (100.0% similar) in 154 aa overlap (64-217:1-154)

            40        50        60        70        80        90   
pF1KB6 GNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKI
                                     ::::::::::::::::::::::::::::::
CCDS59                               MYGKQKIYFADQDQFDMVSDADLQVLDGKI
                                             10        20        30

           100       110       120       130       140       150   
pF1KB6 VALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNH
               40        50        60        70        80        90

           160       170       180       190       200       210   
pF1KB6 VTPEEKEQVYRERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VTPEEKEQVYRERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVT
              100       110       120       130       140       150

           
pF1KB6 LPDP
       ::::
CCDS59 LPDP
           

>>CCDS11431.1 PSMC3IP gene_id:29893|Hs108|chr17           (205 aa)
 initn: 764 init1: 728 opt: 737  Z-score: 676.7  bits: 132.2 E(32554): 2.3e-31
Smith-Waterman score: 1303; 94.5% identity (94.5% similar) in 217 aa overlap (1-217:1-205)

               10        20        30        40        50        60
pF1KB6 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS11 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAE-------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB6 LTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 -----MQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
                120       130       140       150       160        

              190       200       210       
pF1KB6 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
       :::::::::::::::::::::::::::::::::::::
CCDS11 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
      170       180       190       200     




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:50:52 2016 done: Fri Nov  4 12:50:53 2016
 Total Scan time:  2.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]