Result of FASTA (omim) for
pF1KB6919
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6919, 217 aa
1>>>pF1KB6919 217 - 217 aa - 217 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2351+/-0.000388; mu= 5.7659+/- 0.024
mean_var=137.9905+/-27.983, 0's: 0 Z-trim(116.5): 13 B-trim: 309 in 1/53
Lambda= 0.109182
statistics sampled from 27683 (27695) to 27683 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.325), width: 16
Scan time: 6.250
The best scores are: opt bits E(85289)
NP_057640 (OMIM: 608665,614324) homologous-pairing ( 217) 1405 232.2 4.9e-61
NP_001242943 (OMIM: 608665,614324) homologous-pair ( 154) 1008 169.6 2.5e-42
NP_001242945 (OMIM: 608665,614324) homologous-pair ( 138) 894 151.6 5.8e-37
NP_001242944 (OMIM: 608665,614324) homologous-pair ( 138) 894 151.6 5.8e-37
NP_037422 (OMIM: 608665,614324) homologous-pairing ( 205) 737 127.0 2.2e-29
>>NP_057640 (OMIM: 608665,614324) homologous-pairing pro (217 aa)
initn: 1405 init1: 1405 opt: 1405 Z-score: 1216.8 bits: 232.2 E(85289): 4.9e-61
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
130 140 150 160 170 180
190 200 210
pF1KB6 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
:::::::::::::::::::::::::::::::::::::
NP_057 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
190 200 210
>>NP_001242943 (OMIM: 608665,614324) homologous-pairing (154 aa)
initn: 1008 init1: 1008 opt: 1008 Z-score: 880.9 bits: 169.6 E(85289): 2.5e-42
Smith-Waterman score: 1008; 100.0% identity (100.0% similar) in 154 aa overlap (64-217:1-154)
40 50 60 70 80 90
pF1KB6 GNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKI
::::::::::::::::::::::::::::::
NP_001 MYGKQKIYFADQDQFDMVSDADLQVLDGKI
10 20 30
100 110 120 130 140 150
pF1KB6 VALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNH
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 VTPEEKEQVYRERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTPEEKEQVYRERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVT
100 110 120 130 140 150
pF1KB6 LPDP
::::
NP_001 LPDP
>>NP_001242945 (OMIM: 608665,614324) homologous-pairing (138 aa)
initn: 894 init1: 894 opt: 894 Z-score: 784.6 bits: 151.6 E(85289): 5.8e-37
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 138 aa overlap (80-217:1-138)
50 60 70 80 90 100
pF1KB6 TLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRY
::::::::::::::::::::::::::::::
NP_001 MVSDADLQVLDGKIVALTAKVQSLQQSCRY
10 20 30
110 120 130 140 150 160
pF1KB6 MEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKY
40 50 60 70 80 90
170 180 190 200 210
pF1KB6 CKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
100 110 120 130
>>NP_001242944 (OMIM: 608665,614324) homologous-pairing (138 aa)
initn: 894 init1: 894 opt: 894 Z-score: 784.6 bits: 151.6 E(85289): 5.8e-37
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 138 aa overlap (80-217:1-138)
50 60 70 80 90 100
pF1KB6 TLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRY
::::::::::::::::::::::::::::::
NP_001 MVSDADLQVLDGKIVALTAKVQSLQQSCRY
10 20 30
110 120 130 140 150 160
pF1KB6 MEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKY
40 50 60 70 80 90
170 180 190 200 210
pF1KB6 CKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
100 110 120 130
>>NP_037422 (OMIM: 608665,614324) homologous-pairing pro (205 aa)
initn: 764 init1: 728 opt: 737 Z-score: 648.5 bits: 127.0 E(85289): 2.2e-29
Smith-Waterman score: 1303; 94.5% identity (94.5% similar) in 217 aa overlap (1-217:1-205)
10 20 30 40 50 60
pF1KB6 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 KEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAE-------
70 80 90 100 110
130 140 150 160 170 180
pF1KB6 LTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 -----MQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMA
120 130 140 150 160
190 200 210
pF1KB6 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
:::::::::::::::::::::::::::::::::::::
NP_037 TELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLPDP
170 180 190 200
217 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:50:53 2016 done: Fri Nov 4 12:50:54 2016
Total Scan time: 6.250 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]