FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6921, 205 aa
  1>>>pF1KB6921 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9188+/-0.000561; mu= 16.3254+/- 0.034
 mean_var=61.1405+/-12.282, 0's: 0 Z-trim(113.4): 5  B-trim: 520 in 1/50
 Lambda= 0.164025
 statistics sampled from 14051 (14054) to 14051 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.432), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS6344.1 WDYHV1 gene_id:55093|Hs108|chr8         ( 205) 1496 361.4 2.3e-100
CCDS64965.1 WDYHV1 gene_id:55093|Hs108|chr8        ( 145) 1050 255.7   1e-68


>>CCDS6344.1 WDYHV1 gene_id:55093|Hs108|chr8              (205 aa)
 initn: 1496 init1: 1496 opt: 1496  Z-score: 1915.4  bits: 361.4 E(32554): 2.3e-100
Smith-Waterman score: 1496; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB6 MEGNGPAAVHYQPASPPRDACVYSSCYCEENIWKLCEYIKNHDQYPLEECYAVFISNERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MEGNGPAAVHYQPASPPRDACVYSSCYCEENIWKLCEYIKNHDQYPLEECYAVFISNERK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MIPIWKQQARPGDGPVIWDYHVVLLHVSSGGQNFIYDLDTVLPFPCLFDTYVEDAFKSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MIPIWKQQARPGDGPVIWDYHVVLLHVSSGGQNFIYDLDTVLPFPCLFDTYVEDAFKSDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DIHPQFRRKFRVIRADSYLKNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNLNDFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DIHPQFRRKFRVIRADSYLKNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNLNDFIS
              130       140       150       160       170       180

              190       200     
pF1KB6 MDPKVGWGAVYTLSEFTHRFGSKNC
       :::::::::::::::::::::::::
CCDS63 MDPKVGWGAVYTLSEFTHRFGSKNC
              190       200     

>>CCDS64965.1 WDYHV1 gene_id:55093|Hs108|chr8             (145 aa)
 initn: 1050 init1: 1050 opt: 1050  Z-score: 1347.2  bits: 255.7 E(32554): 1e-68
Smith-Waterman score: 1050; 100.0% identity (100.0% similar) in 145 aa overlap (61-205:1-145)

               40        50        60        70        80        90
pF1KB6 NIWKLCEYIKNHDQYPLEECYAVFISNERKMIPIWKQQARPGDGPVIWDYHVVLLHVSSG
                                     ::::::::::::::::::::::::::::::
CCDS64                               MIPIWKQQARPGDGPVIWDYHVVLLHVSSG
                                             10        20        30

              100       110       120       130       140       150
pF1KB6 GQNFIYDLDTVLPFPCLFDTYVEDAFKSDDDIHPQFRRKFRVIRADSYLKNFASDRSHMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GQNFIYDLDTVLPFPCLFDTYVEDAFKSDDDIHPQFRRKFRVIRADSYLKNFASDRSHMK
               40        50        60        70        80        90

              160       170       180       190       200     
pF1KB6 DSSGNWREPPPPYPCIETGDSKMNLNDFISMDPKVGWGAVYTLSEFTHRFGSKNC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DSSGNWREPPPPYPCIETGDSKMNLNDFISMDPKVGWGAVYTLSEFTHRFGSKNC
              100       110       120       130       140     




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:41:50 2016 done: Fri Nov  4 12:41:51 2016
 Total Scan time:  2.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]