FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6923, 205 aa
  1>>>pF1KB6923 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7710+/-0.00098; mu= 10.4320+/- 0.059
 mean_var=55.7519+/-10.750, 0's: 0 Z-trim(103.2): 16  B-trim: 36 in 1/48
 Lambda= 0.171769
 statistics sampled from 7273 (7276) to 7273 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.224), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS3715.1 MAD2L1 gene_id:4085|Hs108|chr4          ( 205) 1307 332.0 1.5e-91


>>CCDS3715.1 MAD2L1 gene_id:4085|Hs108|chr4               (205 aa)
 initn: 1307 init1: 1307 opt: 1307  Z-score: 1757.0  bits: 332.0 E(32554): 1.5e-91
Smith-Waterman score: 1307; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB6 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
              130       140       150       160       170       180

              190       200     
pF1KB6 VRLRSFTTTIHKVNSMVAYKIPVND
       :::::::::::::::::::::::::
CCDS37 VRLRSFTTTIHKVNSMVAYKIPVND
              190       200     




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:34:37 2016 done: Fri Nov  4 12:34:37 2016
 Total Scan time:  1.570 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]