FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6923, 205 aa
  1>>>pF1KB6923 205 - 205 aa - 205 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6013+/-0.000435; mu= 11.6096+/- 0.027
 mean_var=60.0288+/-11.410, 0's: 0 Z-trim(109.5): 44  B-trim: 0 in 0/50
 Lambda= 0.165537
 statistics sampled from 17719 (17733) to 17719 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.208), width:  16
 Scan time:  5.660

The best scores are:                                      opt bits E(85289)
NP_002349 (OMIM: 601467) mitotic spindle assembly  ( 205) 1307 320.7   1e-87
XP_011538809 (OMIM: 604094) PREDICTED: mitotic spi ( 211)  178 51.1 1.6e-06
NP_006332 (OMIM: 604094) mitotic spindle assembly  ( 211)  178 51.1 1.6e-06
NP_001120797 (OMIM: 604094) mitotic spindle assemb ( 211)  178 51.1 1.6e-06


>>NP_002349 (OMIM: 601467) mitotic spindle assembly chec  (205 aa)
 initn: 1307 init1: 1307 opt: 1307  Z-score: 1695.7  bits: 320.7 E(85289): 1e-87
Smith-Waterman score: 1307; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB6 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
              130       140       150       160       170       180

              190       200     
pF1KB6 VRLRSFTTTIHKVNSMVAYKIPVND
       :::::::::::::::::::::::::
NP_002 VRLRSFTTTIHKVNSMVAYKIPVND
              190       200     

>>XP_011538809 (OMIM: 604094) PREDICTED: mitotic spindle  (211 aa)
 initn: 161 init1: 136 opt: 178  Z-score: 238.3  bits: 51.1 E(85289): 1.6e-06
Smith-Waterman score: 178; 27.0% identity (60.3% similar) in 141 aa overlap (17-157:16-152)

               10        20        30        40        50        60
pF1KB6 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
                       :... ::.  ... ::: : .::   : . .::.. . ..   :
XP_011  MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPE
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
       : .:...... .:  : : .:.:.:::: . :   : :.. :.:         :   .. 
XP_011 LNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLL---SISSDSL
      60        70        80        90        100          110     

              130       140       150       160       170       180
pF1KB6 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
        . ... .:. : .:..  . :     .:.: .:..:                       
XP_011 LSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILAD
         120       130       140       150       160       170     

              190       200                
pF1KB6 VRLRSFTTTIHKVNSMVAYKIPVND           
                                           
XP_011 EQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKGS
         180       190       200       210 

>>NP_006332 (OMIM: 604094) mitotic spindle assembly chec  (211 aa)
 initn: 161 init1: 136 opt: 178  Z-score: 238.3  bits: 51.1 E(85289): 1.6e-06
Smith-Waterman score: 178; 27.0% identity (60.3% similar) in 141 aa overlap (17-157:16-152)

               10        20        30        40        50        60
pF1KB6 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
                       :... ::.  ... ::: : .::   : . .::.. . ..   :
NP_006  MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPE
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
       : .:...... .:  : : .:.:.:::: . :   : :.. :.:         :   .. 
NP_006 LNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLL---SISSDSL
      60        70        80        90        100          110     

              130       140       150       160       170       180
pF1KB6 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
        . ... .:. : .:..  . :     .:.: .:..:                       
NP_006 LSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILAD
         120       130       140       150       160       170     

              190       200                
pF1KB6 VRLRSFTTTIHKVNSMVAYKIPVND           
                                           
NP_006 EQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKGS
         180       190       200       210 

>>NP_001120797 (OMIM: 604094) mitotic spindle assembly c  (211 aa)
 initn: 161 init1: 136 opt: 178  Z-score: 238.3  bits: 51.1 E(85289): 1.6e-06
Smith-Waterman score: 178; 27.0% identity (60.3% similar) in 141 aa overlap (17-157:16-152)

               10        20        30        40        50        60
pF1KB6 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
                       :... ::.  ... ::: : .::   : . .::.. . ..   :
NP_001  MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPE
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
       : .:...... .:  : : .:.:.:::: . :   : :.. :.:         :   .. 
NP_001 LNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLL---SISSDSL
      60        70        80        90        100          110     

              130       140       150       160       170       180
pF1KB6 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
        . ... .:. : .:..  . :     .:.: .:..:                       
NP_001 LSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILAD
         120       130       140       150       160       170     

              190       200                
pF1KB6 VRLRSFTTTIHKVNSMVAYKIPVND           
                                           
NP_001 EQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKGS
         180       190       200       210 




205 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:34:37 2016 done: Fri Nov  4 12:34:38 2016
 Total Scan time:  5.660 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]