FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6925, 205 aa
  1>>>pF1KB6925 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9642+/-0.000819; mu= 6.6884+/- 0.050
 mean_var=112.5288+/-21.829, 0's: 0 Z-trim(110.7): 2  B-trim: 6 in 1/50
 Lambda= 0.120904
 statistics sampled from 11820 (11821) to 11820 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.363), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS3309.1 PPP1R2 gene_id:5504|Hs108|chr3          ( 205) 1332 242.4 1.5e-64


>>CCDS3309.1 PPP1R2 gene_id:5504|Hs108|chr3               (205 aa)
 initn: 1332 init1: 1332 opt: 1332  Z-score: 1272.3  bits: 242.4 E(32554): 1.5e-64
Smith-Waterman score: 1332; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB6 MAASTASHRPIKGILKNKTSTTSSMVASAEQPRGNVDEELSKKSQKWDEMNILATYHPAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAASTASHRPIKGILKNKTSTTSSMVASAEQPRGNVDEELSKKSQKWDEMNILATYHPAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KDYGLMKIDEPSTPYHSMMGDDEDACSDTEATEAMAPDILARKLAAAEGLEPKYRIQEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KDYGLMKIDEPSTPYHSMMGDDEDACSDTEATEAMAPDILARKLAAAEGLEPKYRIQEQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SSGEEDSDLSPEEREKKRQFEMKRKLHYNEGLNIKLARQLISKDLHDDDEDEEMLETADG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSGEEDSDLSPEEREKKRQFEMKRKLHYNEGLNIKLARQLISKDLHDDDEDEEMLETADG
              130       140       150       160       170       180

              190       200     
pF1KB6 ESMNTEESNQGSTPSDQQQNKLRSS
       :::::::::::::::::::::::::
CCDS33 ESMNTEESNQGSTPSDQQQNKLRSS
              190       200     




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:17:54 2016 done: Fri Nov  4 12:17:55 2016
 Total Scan time:  2.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]