FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6929, 207 aa
  1>>>pF1KB6929 207 - 207 aa - 207 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7462+/-0.000587; mu= 12.2152+/- 0.036
 mean_var=73.7027+/-14.693, 0's: 0 Z-trim(113.1): 11  B-trim: 0 in 0/52
 Lambda= 0.149394
 statistics sampled from 13740 (13743) to 13740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.422), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS11745.1 AANAT gene_id:15|Hs108|chr17           ( 207) 1457 322.3 1.4e-88
CCDS54169.1 AANAT gene_id:15|Hs108|chr17           ( 252) 1457 322.3 1.6e-88


>>CCDS11745.1 AANAT gene_id:15|Hs108|chr17                (207 aa)
 initn: 1457 init1: 1457 opt: 1457  Z-score: 1703.9  bits: 322.3 E(32554): 1.4e-88
Smith-Waterman score: 1457; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KB6 MSTQSTHPLKPEAPRLPPGIPESPSCQRRHTLPASEFRCLTPEDAVSAFEIEREAFISVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSTQSTHPLKPEAPRLPPGIPESPSCQRRHTLPASEFRCLTPEDAVSAFEIEREAFISVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVCPLYLDEIRHFLTLCPELSLGWFEEGCLVAFIIGSLWDKERLMQESLTLHRSGGHIAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GVCPLYLDEIRHFLTLCPELSLGWFEEGCLVAFIIGSLWDKERLMQESLTLHRSGGHIAH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LHVLAVHRAFRQQGRGPILLWRYLHHLGSQPAVRRAALMCEDALVPFYERFSFHAVGPCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LHVLAVHRAFRQQGRGPILLWRYLHHLGSQPAVRRAALMCEDALVPFYERFSFHAVGPCA
              130       140       150       160       170       180

              190       200       
pF1KB6 ITVGSLTFMELHCSLRGHPFLRRNSGC
       :::::::::::::::::::::::::::
CCDS11 ITVGSLTFMELHCSLRGHPFLRRNSGC
              190       200       

>>CCDS54169.1 AANAT gene_id:15|Hs108|chr17                (252 aa)
 initn: 1457 init1: 1457 opt: 1457  Z-score: 1702.6  bits: 322.3 E(32554): 1.6e-88
Smith-Waterman score: 1457; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:46-252)

                                             10        20        30
pF1KB6                               MSTQSTHPLKPEAPRLPPGIPESPSCQRRH
                                     ::::::::::::::::::::::::::::::
CCDS54 PWRLKVLGGPPWLRRTLPKLGRPKEAPVARMSTQSTHPLKPEAPRLPPGIPESPSCQRRH
          20        30        40        50        60        70     

               40        50        60        70        80        90
pF1KB6 TLPASEFRCLTPEDAVSAFEIEREAFISVLGVCPLYLDEIRHFLTLCPELSLGWFEEGCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLPASEFRCLTPEDAVSAFEIEREAFISVLGVCPLYLDEIRHFLTLCPELSLGWFEEGCL
          80        90       100       110       120       130     

              100       110       120       130       140       150
pF1KB6 VAFIIGSLWDKERLMQESLTLHRSGGHIAHLHVLAVHRAFRQQGRGPILLWRYLHHLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VAFIIGSLWDKERLMQESLTLHRSGGHIAHLHVLAVHRAFRQQGRGPILLWRYLHHLGSQ
         140       150       160       170       180       190     

              160       170       180       190       200       
pF1KB6 PAVRRAALMCEDALVPFYERFSFHAVGPCAITVGSLTFMELHCSLRGHPFLRRNSGC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PAVRRAALMCEDALVPFYERFSFHAVGPCAITVGSLTFMELHCSLRGHPFLRRNSGC
         200       210       220       230       240       250  




207 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:07:44 2016 done: Fri Nov  4 12:07:44 2016
 Total Scan time:  1.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]