FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6929, 207 aa
  1>>>pF1KB6929 207 - 207 aa - 207 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5549+/-0.000278; mu= 13.3026+/- 0.018
 mean_var=75.8608+/-15.103, 0's: 0 Z-trim(120.2): 3  B-trim: 442 in 1/54
 Lambda= 0.147253
 statistics sampled from 35070 (35073) to 35070 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.411), width:  16
 Scan time:  5.270

The best scores are:                                      opt bits E(85289)
NP_001079 (OMIM: 600950,614163) serotonin N-acetyl ( 207) 1457 317.9 7.3e-87
XP_016879748 (OMIM: 600950,614163) PREDICTED: sero ( 245) 1457 318.0 8.4e-87
NP_001160051 (OMIM: 600950,614163) serotonin N-ace ( 252) 1457 318.0 8.6e-87


>>NP_001079 (OMIM: 600950,614163) serotonin N-acetyltran  (207 aa)
 initn: 1457 init1: 1457 opt: 1457  Z-score: 1680.5  bits: 317.9 E(85289): 7.3e-87
Smith-Waterman score: 1457; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KB6 MSTQSTHPLKPEAPRLPPGIPESPSCQRRHTLPASEFRCLTPEDAVSAFEIEREAFISVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTQSTHPLKPEAPRLPPGIPESPSCQRRHTLPASEFRCLTPEDAVSAFEIEREAFISVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GVCPLYLDEIRHFLTLCPELSLGWFEEGCLVAFIIGSLWDKERLMQESLTLHRSGGHIAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVCPLYLDEIRHFLTLCPELSLGWFEEGCLVAFIIGSLWDKERLMQESLTLHRSGGHIAH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LHVLAVHRAFRQQGRGPILLWRYLHHLGSQPAVRRAALMCEDALVPFYERFSFHAVGPCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHVLAVHRAFRQQGRGPILLWRYLHHLGSQPAVRRAALMCEDALVPFYERFSFHAVGPCA
              130       140       150       160       170       180

              190       200       
pF1KB6 ITVGSLTFMELHCSLRGHPFLRRNSGC
       :::::::::::::::::::::::::::
NP_001 ITVGSLTFMELHCSLRGHPFLRRNSGC
              190       200       

>>XP_016879748 (OMIM: 600950,614163) PREDICTED: serotoni  (245 aa)
 initn: 1457 init1: 1457 opt: 1457  Z-score: 1679.4  bits: 318.0 E(85289): 8.4e-87
Smith-Waterman score: 1457; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:39-245)

                                             10        20        30
pF1KB6                               MSTQSTHPLKPEAPRLPPGIPESPSCQRRH
                                     ::::::::::::::::::::::::::::::
XP_016 AVLQQVLGGPPWLRRTLPKLGRPKEAPVARMSTQSTHPLKPEAPRLPPGIPESPSCQRRH
       10        20        30        40        50        60        

               40        50        60        70        80        90
pF1KB6 TLPASEFRCLTPEDAVSAFEIEREAFISVLGVCPLYLDEIRHFLTLCPELSLGWFEEGCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLPASEFRCLTPEDAVSAFEIEREAFISVLGVCPLYLDEIRHFLTLCPELSLGWFEEGCL
       70        80        90       100       110       120        

              100       110       120       130       140       150
pF1KB6 VAFIIGSLWDKERLMQESLTLHRSGGHIAHLHVLAVHRAFRQQGRGPILLWRYLHHLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAFIIGSLWDKERLMQESLTLHRSGGHIAHLHVLAVHRAFRQQGRGPILLWRYLHHLGSQ
      130       140       150       160       170       180        

              160       170       180       190       200       
pF1KB6 PAVRRAALMCEDALVPFYERFSFHAVGPCAITVGSLTFMELHCSLRGHPFLRRNSGC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAVRRAALMCEDALVPFYERFSFHAVGPCAITVGSLTFMELHCSLRGHPFLRRNSGC
      190       200       210       220       230       240     

>>NP_001160051 (OMIM: 600950,614163) serotonin N-acetylt  (252 aa)
 initn: 1457 init1: 1457 opt: 1457  Z-score: 1679.2  bits: 318.0 E(85289): 8.6e-87
Smith-Waterman score: 1457; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:46-252)

                                             10        20        30
pF1KB6                               MSTQSTHPLKPEAPRLPPGIPESPSCQRRH
                                     ::::::::::::::::::::::::::::::
NP_001 PWRLKVLGGPPWLRRTLPKLGRPKEAPVARMSTQSTHPLKPEAPRLPPGIPESPSCQRRH
          20        30        40        50        60        70     

               40        50        60        70        80        90
pF1KB6 TLPASEFRCLTPEDAVSAFEIEREAFISVLGVCPLYLDEIRHFLTLCPELSLGWFEEGCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPASEFRCLTPEDAVSAFEIEREAFISVLGVCPLYLDEIRHFLTLCPELSLGWFEEGCL
          80        90       100       110       120       130     

              100       110       120       130       140       150
pF1KB6 VAFIIGSLWDKERLMQESLTLHRSGGHIAHLHVLAVHRAFRQQGRGPILLWRYLHHLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAFIIGSLWDKERLMQESLTLHRSGGHIAHLHVLAVHRAFRQQGRGPILLWRYLHHLGSQ
         140       150       160       170       180       190     

              160       170       180       190       200       
pF1KB6 PAVRRAALMCEDALVPFYERFSFHAVGPCAITVGSLTFMELHCSLRGHPFLRRNSGC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAVRRAALMCEDALVPFYERFSFHAVGPCAITVGSLTFMELHCSLRGHPFLRRNSGC
         200       210       220       230       240       250  




207 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:07:45 2016 done: Fri Nov  4 12:07:45 2016
 Total Scan time:  5.270 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]