Result of FASTA (ccds) for
pF1KB6930
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6930, 228 aa
1>>>pF1KB6930 228 - 228 aa - 228 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6178+/-0.000768; mu= 12.5887+/- 0.046
mean_var=66.0938+/-13.167, 0's: 0 Z-trim(108.4): 22 B-trim: 0 in 0/49
Lambda= 0.157759
statistics sampled from 10160 (10178) to 10160 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.313), width: 16
Scan time: 1.760
The best scores are: opt bits E(32554)
CCDS549.1 CMPK1 gene_id:51727|Hs108|chr1 ( 228) 1499 349.5 1e-96
CCDS44135.1 CMPK1 gene_id:51727|Hs108|chr1 ( 179) 814 193.6 7e-50
CCDS83419.1 AK1 gene_id:203|Hs108|chr9 ( 210) 522 127.2 8.2e-30
CCDS6881.1 AK1 gene_id:203|Hs108|chr9 ( 194) 521 126.9 8.9e-30
CCDS676.1 AK5 gene_id:26289|Hs108|chr1 ( 536) 441 108.9 6.7e-24
CCDS675.1 AK5 gene_id:26289|Hs108|chr1 ( 562) 441 108.9 6.9e-24
>>CCDS549.1 CMPK1 gene_id:51727|Hs108|chr1 (228 aa)
initn: 1499 init1: 1499 opt: 1499 Z-score: 1849.9 bits: 349.5 E(32554): 1e-96
Smith-Waterman score: 1499; 99.6% identity (99.6% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB6 MLSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYG
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLSRCRSGLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
130 140 150 160 170 180
190 200 210 220
pF1KB6 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
190 200 210 220
>>CCDS44135.1 CMPK1 gene_id:51727|Hs108|chr1 (179 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1009.0 bits: 193.6 E(32554): 7e-50
Smith-Waterman score: 1079; 78.1% identity (78.1% similar) in 228 aa overlap (1-228:1-179)
10 20 30 40 50 60
pF1KB6 MLSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYG
::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLSRCRSGLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVE---
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK
::::::::::::::
CCDS44 ----------------------------------------------EMDQTMAANAQKNK
60 70
130 140 150 160 170 180
pF1KB6 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
80 90 100 110 120 130
190 200 210 220
pF1KB6 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
140 150 160 170
>>CCDS83419.1 AK1 gene_id:203|Hs108|chr9 (210 aa)
initn: 428 init1: 203 opt: 522 Z-score: 648.7 bits: 127.2 E(32554): 8.2e-30
Smith-Waterman score: 522; 40.7% identity (74.5% similar) in 204 aa overlap (22-225:11-207)
10 20 30 40 50 60
pF1KB6 MLSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYG
:. : .: : ..::.::::.:::::: .::.:::
CCDS83 MGCCSSSDPRREDDLRAREKLKKTKIIFVVGGPGSGKGTQCEKIVQKYG
10 20 30 40
70 80 90 100 110 120
pF1KB6 YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK
:::::.:.:::.: .. : :. . . ...:..::.: ....:. : . .:..:.
CCDS83 YTHLSTGDLLRSEVSS-GSARGKKLSEIMEKGQLVPLETVLDMLRDAM--VAKVNTSKG-
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
:::::.::. .. . ... . :. ...:. : . : .: :.::..::: :::.:..
CCDS83 FLIDGYPREVQQGEEFERRI-GQP--TLLLYVDAGPETMTQRLLKRGETSGRVDDNEETI
110 120 130 140 150 160
190 200 210 220
pF1KB6 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
.::..:: ..:.:.: .::. : :.:..: ::: ::..: .:
CCDS83 KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALK
170 180 190 200 210
>>CCDS6881.1 AK1 gene_id:203|Hs108|chr9 (194 aa)
initn: 428 init1: 203 opt: 521 Z-score: 648.0 bits: 126.9 E(32554): 8.9e-30
Smith-Waterman score: 521; 41.5% identity (76.4% similar) in 195 aa overlap (31-225:4-191)
10 20 30 40 50 60
pF1KB6 MLSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYG
.: : ..::.::::.:::::: .::.:::
CCDS68 MEEKLKKTKIIFVVGGPGSGKGTQCEKIVQKYG
10 20 30
70 80 90 100 110 120
pF1KB6 YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK
:::::.:.:::.: .. : :. . . ...:..::.: ....:. : . .:..:.
CCDS68 YTHLSTGDLLRSEVSS-GSARGKKLSEIMEKGQLVPLETVLDMLRDAM--VAKVNTSKG-
40 50 60 70 80
130 140 150 160 170 180
pF1KB6 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
:::::.::. .. . ... . :. ...:. : . : .: :.::..::: :::.:..
CCDS68 FLIDGYPREVQQGEEFERRI-GQP--TLLLYVDAGPETMTQRLLKRGETSGRVDDNEETI
90 100 110 120 130 140
190 200 210 220
pF1KB6 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
.::..:: ..:.:.: .::. : :.:..: ::: ::..: .:
CCDS68 KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALK
150 160 170 180 190
>>CCDS676.1 AK5 gene_id:26289|Hs108|chr1 (536 aa)
initn: 484 init1: 187 opt: 441 Z-score: 542.6 bits: 108.9 E(32554): 6.7e-24
Smith-Waterman score: 441; 36.6% identity (71.1% similar) in 194 aa overlap (32-225:347-533)
10 20 30 40 50 60
pF1KB6 LSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYGY
: : ..:..::::.:::::: ..:::::.
CCDS67 IIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGF
320 330 340 350 360 370
70 80 90 100 110 120
pF1KB6 THLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKF
::::.:::::.: . .:. ..::. ...: .:: :.. :::. : .:. .. :
CCDS67 THLSTGELLREELAS-ESERSKLIRDIMERGDLVPSGIVLELLKEAM---VASLGDTRGF
380 390 400 410 420 430
130 140 150 160 170 180
pF1KB6 LIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLE
::::.::. . . ... . .: ..:. .::. . .: :.:..:: ::. ...
CCDS67 LIDGYPREVKQGEEFGRRI---GDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIA
440 450 460 470 480
190 200 210 220
pF1KB6 KRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
::...: ... :.: :: ...::.: . ..:: .. .:
CCDS67 KRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF
490 500 510 520 530
>--
initn: 350 init1: 169 opt: 410 Z-score: 504.5 bits: 101.8 E(32554): 8.9e-22
Smith-Waterman score: 410; 34.2% identity (67.8% similar) in 199 aa overlap (30-227:101-292)
10 20 30 40 50
pF1KB6 MLSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKY
: .: ...:.::::.::::: .:.:.:
CCDS67 RLPPIHQFSIESDTDLSETAELIEEYEVFDPTRPRPKIILVIGGPGSGKGTQSLKIAERY
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB6 GYTHLSAGELLRDERKNPDSQYG-ELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQK
:. ..:.::::: . .. .:. :: : : :...: : ::. .:... : ..
CCDS67 GFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQI----PDE
140 150 160 170 180
120 130 140 150 160 170
pF1KB6 NKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRE
. ..:::::: : :. . : ..:.:. : :. :: :.:....:: ::: .
CCDS67 EGIVIDGFPR--DVAQALS-FEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVK
190 200 210 220 230 240
180 190 200 210 220
pF1KB6 SLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
. ..:.... :.. :.. ..: : . .::... :::: .. . :..
CCDS67 ATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGS
250 260 270 280 290 300
CCDS67 SDLDPSMILDTGEIIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGK
310 320 330 340 350 360
>>CCDS675.1 AK5 gene_id:26289|Hs108|chr1 (562 aa)
initn: 484 init1: 187 opt: 441 Z-score: 542.3 bits: 108.9 E(32554): 6.9e-24
Smith-Waterman score: 441; 36.6% identity (71.1% similar) in 194 aa overlap (32-225:373-559)
10 20 30 40 50 60
pF1KB6 LSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYGY
: : ..:..::::.:::::: ..:::::.
CCDS67 IIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGF
350 360 370 380 390 400
70 80 90 100 110 120
pF1KB6 THLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKF
::::.:::::.: . .:. ..::. ...: .:: :.. :::. : .:. .. :
CCDS67 THLSTGELLREELAS-ESERSKLIRDIMERGDLVPSGIVLELLKEAM---VASLGDTRGF
410 420 430 440 450
130 140 150 160 170 180
pF1KB6 LIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLE
::::.::. . . ... . .: ..:. .::. . .: :.:..:: ::. ...
CCDS67 LIDGYPREVKQGEEFGRRI---GDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIA
460 470 480 490 500 510
190 200 210 220
pF1KB6 KRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
::...: ... :.: :: ...::.: . ..:: .. .:
CCDS67 KRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF
520 530 540 550 560
>--
initn: 350 init1: 169 opt: 410 Z-score: 504.1 bits: 101.8 E(32554): 9.2e-22
Smith-Waterman score: 410; 34.2% identity (67.8% similar) in 199 aa overlap (30-227:127-318)
10 20 30 40 50
pF1KB6 MLSRCRSRLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKY
: .: ...:.::::.::::: .:.:.:
CCDS67 RLPPIHQFSIESDTDLSETAELIEEYEVFDPTRPRPKIILVIGGPGSGKGTQSLKIAERY
100 110 120 130 140 150
60 70 80 90 100 110
pF1KB6 GYTHLSAGELLRDERKNPDSQYG-ELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQK
:. ..:.::::: . .. .:. :: : : :...: : ::. .:... : ..
CCDS67 GFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQI----PDE
160 170 180 190 200 210
120 130 140 150 160 170
pF1KB6 NKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRE
. ..:::::: : :. . : ..:.:. : :. :: :.:....:: ::: .
CCDS67 EGIVIDGFPR--DVAQALS-FEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVK
220 230 240 250 260
180 190 200 210 220
pF1KB6 SLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG
. ..:.... :.. :.. ..: : . .::... :::: .. . :..
CCDS67 ATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGS
270 280 290 300 310 320
CCDS67 SDLDPSMILDTGEIIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGK
330 340 350 360 370 380
228 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:05:03 2016 done: Fri Nov 4 12:05:03 2016
Total Scan time: 1.760 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]