Result of FASTA (ccds) for
pF1KB6932
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6932, 228 aa
1>>>pF1KB6932 228 - 228 aa - 228 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6028+/-0.000788; mu= 11.7757+/- 0.047
mean_var=60.3722+/-12.091, 0's: 0 Z-trim(106.7): 20 B-trim: 41 in 1/53
Lambda= 0.165065
statistics sampled from 9105 (9113) to 9105 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.28), width: 16
Scan time: 1.410
The best scores are: opt bits E(32554)
CCDS2388.1 RPE gene_id:6120|Hs108|chr2 ( 228) 1553 378.1 2.5e-105
CCDS65929.1 RPEL1 gene_id:729020|Hs108|chr10 ( 228) 1488 362.6 1.2e-100
CCDS82567.1 RPE gene_id:6120|Hs108|chr2 ( 225) 1310 320.2 6.6e-88
CCDS82568.1 RPE gene_id:6120|Hs108|chr2 ( 191) 1303 318.6 1.8e-87
CCDS63107.1 RPE gene_id:6120|Hs108|chr2 ( 199) 1092 268.3 2.5e-72
CCDS63108.1 RPE gene_id:6120|Hs108|chr2 ( 160) 1081 265.7 1.3e-71
CCDS42810.1 RPE gene_id:6120|Hs108|chr2 ( 178) 773 192.3 1.7e-49
>>CCDS2388.1 RPE gene_id:6120|Hs108|chr2 (228 aa)
initn: 1553 init1: 1553 opt: 1553 Z-score: 2004.3 bits: 378.1 E(32554): 2.5e-105
Smith-Waterman score: 1553; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
190 200 210 220
>>CCDS65929.1 RPEL1 gene_id:729020|Hs108|chr10 (228 aa)
initn: 1488 init1: 1488 opt: 1488 Z-score: 1920.7 bits: 362.6 E(32554): 1.2e-100
Smith-Waterman score: 1488; 96.1% identity (97.8% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
:::::::::::::::::::::.::.:::::::::::::::::::::::::::::::::::
CCDS65 MASGCKIGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
:::::::::::::::::::::::::: :::::::::::::::.:::::::::::::::::
CCDS65 LGQDPFFDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
:::::::::::::::::::::::::::: :::::::::::::::::::::::: :::::
CCDS65 PGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSLDIEGDGGVGS
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::::::: :::::::::::::::::::::.::::::::::::
CCDS65 DTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSLDR
190 200 210 220
>>CCDS82567.1 RPE gene_id:6120|Hs108|chr2 (225 aa)
initn: 1332 init1: 1310 opt: 1310 Z-score: 1691.7 bits: 320.2 E(32554): 6.6e-88
Smith-Waterman score: 1310; 99.5% identity (99.5% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
:::::::: :
CCDS82 DTVHKCAEIGVQWRDLCSLQSLPAGFKRFSCLSLLSSWDYRQELT
190 200 210 220
>>CCDS82568.1 RPE gene_id:6120|Hs108|chr2 (191 aa)
initn: 1303 init1: 1303 opt: 1303 Z-score: 1683.9 bits: 318.6 E(32554): 1.8e-87
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::
CCDS82 DTVHKCAEELT
190
>>CCDS63107.1 RPE gene_id:6120|Hs108|chr2 (199 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1412.0 bits: 268.3 E(32554): 2.5e-72
Smith-Waterman score: 1274; 87.3% identity (87.3% similar) in 228 aa overlap (1-228:1-199)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
:::::::::::::::::::::::::::::::::::::::
CCDS63 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPK---------------------
130 140 150
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::::::::::::::::::::::::::::::::::
CCDS63 --------AGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
160 170 180 190
>>CCDS63108.1 RPE gene_id:6120|Hs108|chr2 (160 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1399.4 bits: 265.7 E(32554): 1.3e-71
Smith-Waterman score: 1081; 100.0% identity (100.0% similar) in 160 aa overlap (69-228:1-160)
40 50 60 70 80 90
pF1KB6 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT
::::::::::::::::::::::::::::::
CCDS63 MHMMVSKPEQWVKPMAVAGANQYTFHLEAT
10 20 30
100 110 120 130 140 150
pF1KB6 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
100 110 120 130 140 150
220
pF1KB6 EAAQKRSLDR
::::::::::
CCDS63 EAAQKRSLDR
160
>>CCDS42810.1 RPE gene_id:6120|Hs108|chr2 (178 aa)
initn: 773 init1: 773 opt: 773 Z-score: 1002.3 bits: 192.3 E(32554): 1.7e-49
Smith-Waterman score: 1035; 89.9% identity (89.9% similar) in 178 aa overlap (69-228:1-178)
40 50 60 70 80 90
pF1KB6 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT
::::::::::::::::::::::::::::::
CCDS42 MHMMVSKPEQWVKPMAVAGANQYTFHLEAT
10 20 30
100 110 120 130 140
pF1KB6 ENPGALIKDIRENGMK------------------VGLAIKPGTSVEYLAPWANQIDMALV
:::::::::::::::: ::::::::::::::::::::::::::
CCDS42 ENPGALIKDIRENGMKSCSVTQAEVQWHSQGPLQVGLAIKPGTSVEYLAPWANQIDMALV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI
100 110 120 130 140 150
210 220
pF1KB6 MRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::::::::::::::::::::::
CCDS42 MRSEDPRSVINLLRNVCSEAAQKRSLDR
160 170
228 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:02:02 2016 done: Fri Nov 4 12:02:03 2016
Total Scan time: 1.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]