Result of FASTA (omim) for
pF1KB6932
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6932, 228 aa
1>>>pF1KB6932 228 - 228 aa - 228 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2892+/-0.000344; mu= 13.8003+/- 0.021
mean_var=65.0416+/-12.842, 0's: 0 Z-trim(114.1): 16 B-trim: 138 in 1/55
Lambda= 0.159030
statistics sampled from 23813 (23828) to 23813 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.279), width: 16
Scan time: 4.220
The best scores are: opt bits E(85289)
NP_954699 (OMIM: 180480) ribulose-phosphate 3-epim ( 228) 1553 364.9 6.4e-101
NP_001305856 (OMIM: 180480) ribulose-phosphate 3-e ( 225) 1310 309.1 3.8e-84
NP_001305858 (OMIM: 180480) ribulose-phosphate 3-e ( 191) 1303 307.5 1e-83
NP_001265218 (OMIM: 180480) ribulose-phosphate 3-e ( 209) 1303 307.5 1.1e-83
NP_001265214 (OMIM: 180480) ribulose-phosphate 3-e ( 199) 1092 259.1 3.9e-69
NP_001305860 (OMIM: 180480) ribulose-phosphate 3-e ( 160) 1081 256.5 1.9e-68
XP_006712740 (OMIM: 180480) PREDICTED: ribulose-ph ( 160) 1081 256.5 1.9e-68
NP_001265217 (OMIM: 180480) ribulose-phosphate 3-e ( 160) 1081 256.5 1.9e-68
NP_001305859 (OMIM: 180480) ribulose-phosphate 3-e ( 160) 1081 256.5 1.9e-68
NP_001265215 (OMIM: 180480) ribulose-phosphate 3-e ( 160) 1081 256.5 1.9e-68
NP_001305857 (OMIM: 180480) ribulose-phosphate 3-e ( 211) 797 191.4 9.8e-49
NP_001305855 (OMIM: 180480) ribulose-phosphate 3-e ( 246) 797 191.5 1.1e-48
NP_008847 (OMIM: 180480) ribulose-phosphate 3-epim ( 178) 773 185.9 3.8e-47
NP_001265211 (OMIM: 180480) ribulose-phosphate 3-e ( 178) 773 185.9 3.8e-47
NP_001265212 (OMIM: 180480) ribulose-phosphate 3-e ( 178) 773 185.9 3.8e-47
>>NP_954699 (OMIM: 180480) ribulose-phosphate 3-epimeras (228 aa)
initn: 1553 init1: 1553 opt: 1553 Z-score: 1932.9 bits: 364.9 E(85289): 6.4e-101
Smith-Waterman score: 1553; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
190 200 210 220
>>NP_001305856 (OMIM: 180480) ribulose-phosphate 3-epime (225 aa)
initn: 1332 init1: 1310 opt: 1310 Z-score: 1631.6 bits: 309.1 E(85289): 3.8e-84
Smith-Waterman score: 1310; 99.5% identity (99.5% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
:::::::: :
NP_001 DTVHKCAEIGVQWRDLCSLQSLPAGFKRFSCLSLLSSWDYRQELT
190 200 210 220
>>NP_001305858 (OMIM: 180480) ribulose-phosphate 3-epime (191 aa)
initn: 1303 init1: 1303 opt: 1303 Z-score: 1624.0 bits: 307.5 E(85289): 1e-83
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::
NP_001 DTVHKCAEELT
190
>>NP_001265218 (OMIM: 180480) ribulose-phosphate 3-epime (209 aa)
initn: 1303 init1: 1303 opt: 1303 Z-score: 1623.4 bits: 307.5 E(85289): 1.1e-83
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
130 140 150 160 170 180
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::
NP_001 DTVHKCAEPFGRSLSFTALEVRNFSKIRN
190 200
>>NP_001265214 (OMIM: 180480) ribulose-phosphate 3-epime (199 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1362.1 bits: 259.1 E(85289): 3.9e-69
Smith-Waterman score: 1274; 87.3% identity (87.3% similar) in 228 aa overlap (1-228:1-199)
10 20 30 40 50 60
pF1KB6 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP
:::::::::::::::::::::::::::::::::::::::
NP_001 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPK---------------------
130 140 150
190 200 210 220
pF1KB6 DTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
::::::::::::::::::::::::::::::::::::::::
NP_001 --------AGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
160 170 180 190
>>NP_001305860 (OMIM: 180480) ribulose-phosphate 3-epime (160 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1349.9 bits: 256.5 E(85289): 1.9e-68
Smith-Waterman score: 1081; 100.0% identity (100.0% similar) in 160 aa overlap (69-228:1-160)
40 50 60 70 80 90
pF1KB6 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT
::::::::::::::::::::::::::::::
NP_001 MHMMVSKPEQWVKPMAVAGANQYTFHLEAT
10 20 30
100 110 120 130 140 150
pF1KB6 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
100 110 120 130 140 150
220
pF1KB6 EAAQKRSLDR
::::::::::
NP_001 EAAQKRSLDR
160
>>XP_006712740 (OMIM: 180480) PREDICTED: ribulose-phosph (160 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1349.9 bits: 256.5 E(85289): 1.9e-68
Smith-Waterman score: 1081; 100.0% identity (100.0% similar) in 160 aa overlap (69-228:1-160)
40 50 60 70 80 90
pF1KB6 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT
::::::::::::::::::::::::::::::
XP_006 MHMMVSKPEQWVKPMAVAGANQYTFHLEAT
10 20 30
100 110 120 130 140 150
pF1KB6 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
100 110 120 130 140 150
220
pF1KB6 EAAQKRSLDR
::::::::::
XP_006 EAAQKRSLDR
160
>>NP_001265217 (OMIM: 180480) ribulose-phosphate 3-epime (160 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1349.9 bits: 256.5 E(85289): 1.9e-68
Smith-Waterman score: 1081; 100.0% identity (100.0% similar) in 160 aa overlap (69-228:1-160)
40 50 60 70 80 90
pF1KB6 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT
::::::::::::::::::::::::::::::
NP_001 MHMMVSKPEQWVKPMAVAGANQYTFHLEAT
10 20 30
100 110 120 130 140 150
pF1KB6 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
100 110 120 130 140 150
220
pF1KB6 EAAQKRSLDR
::::::::::
NP_001 EAAQKRSLDR
160
>>NP_001305859 (OMIM: 180480) ribulose-phosphate 3-epime (160 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1349.9 bits: 256.5 E(85289): 1.9e-68
Smith-Waterman score: 1081; 100.0% identity (100.0% similar) in 160 aa overlap (69-228:1-160)
40 50 60 70 80 90
pF1KB6 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT
::::::::::::::::::::::::::::::
NP_001 MHMMVSKPEQWVKPMAVAGANQYTFHLEAT
10 20 30
100 110 120 130 140 150
pF1KB6 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
100 110 120 130 140 150
220
pF1KB6 EAAQKRSLDR
::::::::::
NP_001 EAAQKRSLDR
160
>>NP_001265215 (OMIM: 180480) ribulose-phosphate 3-epime (160 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1349.9 bits: 256.5 E(85289): 1.9e-68
Smith-Waterman score: 1081; 100.0% identity (100.0% similar) in 160 aa overlap (69-228:1-160)
40 50 60 70 80 90
pF1KB6 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEAT
::::::::::::::::::::::::::::::
NP_001 MHMMVSKPEQWVKPMAVAGANQYTFHLEAT
10 20 30
100 110 120 130 140 150
pF1KB6 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS
100 110 120 130 140 150
220
pF1KB6 EAAQKRSLDR
::::::::::
NP_001 EAAQKRSLDR
160
228 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:02:03 2016 done: Fri Nov 4 12:02:03 2016
Total Scan time: 4.220 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]