Result of FASTA (ccds) for
pF1KB6933
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6933, 207 aa
1>>>pF1KB6933 207 - 207 aa - 207 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1046+/-0.000655; mu= 12.3393+/- 0.040
mean_var=113.0379+/-21.683, 0's: 0 Z-trim(114.8): 59 B-trim: 0 in 0/54
Lambda= 0.120632
statistics sampled from 15255 (15316) to 15255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.47), width: 16
Scan time: 2.390
The best scores are: opt bits E(32554)
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 1390 251.4 2.9e-67
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 1178 214.5 3.6e-56
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 1057 193.4 7.7e-50
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 965 177.3 4.4e-45
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 857 158.6 2.2e-39
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 669 125.8 1.3e-29
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 668 125.6 1.5e-29
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 664 124.9 2.5e-29
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 664 124.9 2.5e-29
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 662 124.6 3.1e-29
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 651 122.7 1.2e-28
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 549 104.8 2.2e-23
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 544 104.0 4e-23
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 488 94.2 3.3e-20
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 426 83.5 7.4e-17
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 398 78.7 2.6e-15
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 394 77.9 3.5e-15
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 391 77.4 5e-15
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 365 73.0 1.4e-13
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 340 68.6 2.7e-12
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 337 68.0 3.4e-12
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 327 66.3 1.2e-11
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 326 66.2 1.6e-11
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 322 65.3 1.7e-11
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 316 64.4 4.4e-11
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 313 63.9 7e-11
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 309 63.1 8.5e-11
>>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa)
initn: 1390 init1: 1390 opt: 1390 Z-score: 1321.0 bits: 251.4 E(32554): 2.9e-67
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KB6 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV
130 140 150 160 170 180
190 200
pF1KB6 GSIATQYLTNRAEHDRIARQWTKRYAT
:::::::::::::::::::::::::::
CCDS22 GSIATQYLTNRAEHDRIARQWTKRYAT
190 200
>>CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 (201 aa)
initn: 1077 init1: 1077 opt: 1178 Z-score: 1121.8 bits: 214.5 E(32554): 3.6e-56
Smith-Waterman score: 1178; 86.0% identity (93.2% similar) in 207 aa overlap (1-207:1-201)
10 20 30 40 50 60
pF1KB6 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLS
::.. :: :: :::::.::::.:::. . ::: .:. .: .::. :.::::.::::
CCDS26 MSTEAQRVDD-SPSTSGGSSDGDQRESVQQEPE-REQVQP----KKKEGKISSKTAAKLS
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS26 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV
120 130 140 150 160 170
190 200
pF1KB6 GSIATQYLTNRAEHDRIARQWTKRYAT
:::::::.::::::::.::::::::::
CCDS26 GSIATQYMTNRAEHDRMARQWTKRYAT
180 190 200
>>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa)
initn: 1005 init1: 1005 opt: 1057 Z-score: 1008.2 bits: 193.4 E(32554): 7.7e-50
Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (8-207:2-193)
10 20 30 40 50
pF1KB6 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL
:::.: ...:.::.... .:. .: . : .::..:.: ::.. :
CCDS26 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL
10 20 30 40
60 70 80 90 100 110
pF1KB6 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD
::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. .
CCDS26 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL
110 120 130 140 150 160
180 190 200
pF1KB6 VGSIATQYLTNRAEHDRIARQWTKRYAT
::::::::.::::::::.::::::::::
CCDS26 VGSIATQYMTNRAEHDRMARQWTKRYAT
170 180 190
>>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa)
initn: 965 init1: 965 opt: 965 Z-score: 922.8 bits: 177.3 E(32554): 4.4e-45
Smith-Waterman score: 965; 95.8% identity (99.3% similar) in 143 aa overlap (65-207:18-160)
40 50 60 70 80 90
pF1KB6 QEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWR
:::::::.::::::::::::::::::::::
CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWR
10 20 30 40
100 110 120 130 140 150
pF1KB6 STILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS
::::::::::::::::::::::. .:::::::::::::::::::::::::::::::::::
CCDS56 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS
50 60 70 80 90 100
160 170 180 190 200
pF1KB6 PALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
:::::::::::::::::::::::::::::::::.::::::::.::::::::::
CCDS56 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
110 120 130 140 150 160
>>CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 (176 aa)
initn: 948 init1: 849 opt: 857 Z-score: 820.6 bits: 158.6 E(32554): 2.2e-39
Smith-Waterman score: 897; 71.1% identity (82.6% similar) in 201 aa overlap (8-207:2-176)
10 20 30 40 50
pF1KB6 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL
:::.: ...:.::.... .:. .: . : .::..:.: ::.. :
CCDS26 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL
10 20 30 40
60 70 80 90 100 110
pF1KB6 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD
::::: :::::::::::::::::::::::::::::::::::. .
CCDS26 STSAK-----------------SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE
50 60 70 80
120 130 140 150 160 170
pF1KB6 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL
90 100 110 120 130 140
180 190 200
pF1KB6 VGSIATQYLTNRAEHDRIARQWTKRYAT
::::::::.::::::::.::::::::::
CCDS26 VGSIATQYMTNRAEHDRMARQWTKRYAT
150 160 170
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 669 init1: 669 opt: 669 Z-score: 644.9 bits: 125.8 E(32554): 1.3e-29
Smith-Waterman score: 669; 62.9% identity (86.0% similar) in 143 aa overlap (64-206:4-146)
40 50 60 70 80 90
pF1KB6 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
:::::::... ::: .::::: ::....:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHW
10 20 30
100 110 120 130 140 150
pF1KB6 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.::: :.:.:::::: . : .::::::::..: :.::: ::::.: ::::::...:
CCDS72 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
160 170 180 190 200
pF1KB6 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
:::::.::::::::::: : :: :::: .:: : ... ...: ::.::..::
CCDS72 SPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
100 110 120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 668 init1: 668 opt: 668 Z-score: 643.9 bits: 125.6 E(32554): 1.5e-29
Smith-Waterman score: 668; 66.4% identity (84.6% similar) in 143 aa overlap (64-206:4-146)
40 50 60 70 80 90
pF1KB6 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
:::.::: ... ::: .::::: ::....:
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHW
10 20 30
100 110 120 130 140 150
pF1KB6 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .:::::::::.: ::::: ::::.: ::::::...:
CCDS43 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
160 170 180 190 200
pF1KB6 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
::::::::::::::::: : :: :::: :: : :.: ...::::.::..::
CCDS43 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
100 110 120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 664 init1: 664 opt: 664 Z-score: 640.2 bits: 124.9 E(32554): 2.5e-29
Smith-Waterman score: 664; 65.7% identity (85.3% similar) in 143 aa overlap (64-206:4-146)
40 50 60 70 80 90
pF1KB6 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
:::.:::.... ::: .::::: ::....:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW
10 20 30
100 110 120 130 140 150
pF1KB6 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .:::::::::.: ::::: ::::.: ::::::...:
CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
160 170 180 190 200
pF1KB6 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
::::::::::::::::: : :: :::: :: : :.: ...::.:.::..::
CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
100 110 120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 664 init1: 664 opt: 664 Z-score: 640.1 bits: 124.9 E(32554): 2.5e-29
Smith-Waterman score: 664; 65.7% identity (85.3% similar) in 143 aa overlap (64-206:4-146)
40 50 60 70 80 90
pF1KB6 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
:::.:::.... ::: .::::: ::....:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW
10 20 30
100 110 120 130 140 150
pF1KB6 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .:::::::::.: ::::: ::::.: ::::::...:
CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
160 170 180 190 200
pF1KB6 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
::::::::::::::::: : :: :::: :: : :.: ...:.::.::..::
CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
100 110 120 130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 662 init1: 662 opt: 662 Z-score: 638.3 bits: 124.6 E(32554): 3.1e-29
Smith-Waterman score: 662; 64.3% identity (84.6% similar) in 143 aa overlap (64-206:4-146)
40 50 60 70 80 90
pF1KB6 EQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW
:::::::... ::: .::::: ::....:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHW
10 20 30
100 110 120 130 140 150
pF1KB6 RSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW
..::.:: : :.:::::: : : .:::::::::.: :.::: ::::.: ::::::...:
CCDS54 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
160 170 180 190 200
pF1KB6 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
:::::.::::::::::: : :: :::: :: : ..: ...:.::.::..::
CCDS54 SPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
100 110 120 130 140
207 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:58:55 2016 done: Fri Nov 4 11:58:56 2016
Total Scan time: 2.390 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]