FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6934, 219 aa
  1>>>pF1KB6934 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3782+/-0.000643; mu= 9.5414+/- 0.039
 mean_var=95.0983+/-18.937, 0's: 0 Z-trim(114.3): 6  B-trim: 354 in 1/51
 Lambda= 0.131519
 statistics sampled from 14876 (14880) to 14876 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.457), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS6050.1 BNIP3L gene_id:665|Hs108|chr8           ( 219) 1488 291.5 2.7e-79
CCDS83267.1 BNIP3L gene_id:665|Hs108|chr8          ( 179) 1194 235.7 1.4e-62
CCDS7663.2 BNIP3 gene_id:664|Hs108|chr10           ( 259)  723 146.4 1.6e-35


>>CCDS6050.1 BNIP3L gene_id:665|Hs108|chr8                (219 aa)
 initn: 1488 init1: 1488 opt: 1488  Z-score: 1536.9  bits: 291.5 E(32554): 2.7e-79
Smith-Waterman score: 1488; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB6 MSSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MSSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PSSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PSSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EEEVVEGEKEVEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EEEVVEGEKEVEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGI
              130       140       150       160       170       180

              190       200       210         
pF1KB6 FSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
       :::::::::::::::::::::::::::::::::::::::
CCDS60 FSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
              190       200       210         

>>CCDS83267.1 BNIP3L gene_id:665|Hs108|chr8               (179 aa)
 initn: 1194 init1: 1194 opt: 1194  Z-score: 1236.8  bits: 235.7 E(32554): 1.4e-62
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 179 aa overlap (41-219:1-179)

               20        30        40        50        60        70
pF1KB6 PLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHVPSSSSIHNGD
                                     ::::::::::::::::::::::::::::::
CCDS83                               MNSSNGNDNGNGKNGGLEHVPSSSSIHNGD
                                             10        20        30

               80        90       100       110       120       130
pF1KB6 MEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKE
               40        50        60        70        80        90

              140       150       160       170       180       190
pF1KB6 VEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VEALKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAMKKGGIFSAEFLKVFI
              100       110       120       130       140       150

              200       210         
pF1KB6 PSLFLSHVLALGLGIYIGKRLSTPSASTY
       :::::::::::::::::::::::::::::
CCDS83 PSLFLSHVLALGLGIYIGKRLSTPSASTY
              160       170         

>>CCDS7663.2 BNIP3 gene_id:664|Hs108|chr10                (259 aa)
 initn: 606 init1: 446 opt: 723  Z-score: 751.4  bits: 146.4 E(32554): 1.6e-35
Smith-Waterman score: 723; 62.4% identity (84.0% similar) in 194 aa overlap (32-219:79-259)

              10        20        30        40        50        60 
pF1KB6 SSHLVEPPPPLHNNNNNCEENEQSLPPPAGLNSSWVELPMNSSNGNDNGNGKNGGLEHVP
                                     :..::::: . :.:::       ::   ::
CCDS76 HPAARRGLRSPQLPSGAMSQNGAPGMQEESLQGSWVELHF-SNNGN-------GG--SVP
       50        60        70        80         90                 

              70        80        90           100       110       
pF1KB6 SSSSIHNGDMEKILLDAQHESGQSSSRGSSHCDSP----SPQEDGQIMFDVEMHT-SRDH
       .: ::.::::::::::::::::.:::. :::::::    .::. ..   ... :. .. .
CCDS76 ASVSIYNGDMEKILLDAQHESGRSSSK-SSHCDSPPRSQTPQDTNRAS-ETDTHSIGEKN
      100       110       120        130       140        150      

        120       130        140       150       160       170     
pF1KB6 SSQSEEEVVEGEKEVEA-LKKSADWVSDWSSRPENIPPKEFHFRHPKRSVSLSMRKSGAM
       ::::::. .: .::::. :::..::. :::::::::::::: :.::::...::::....:
CCDS76 SSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSVM
        160       170       180       190       200       210      

         180       190       200       210         
pF1KB6 KKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKRLSTPSASTY
       ::::::::::::::.:::.:::.::.:::::::.::.: :.::.
CCDS76 KKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTT-STSTF
        220       230       240       250          




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:57:09 2016 done: Sat Nov  5 11:57:10 2016
 Total Scan time:  2.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]