FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6935, 207 aa
  1>>>pF1KB6935 207 - 207 aa - 207 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1171+/-0.00028; mu= 15.7170+/- 0.018
 mean_var=75.2677+/-14.896, 0's: 0 Z-trim(119.6): 8  B-trim: 0 in 0/57
 Lambda= 0.147832
 statistics sampled from 33838 (33844) to 33838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.397), width:  16
 Scan time:  5.940

The best scores are:                                      opt bits E(85289)
XP_005252739 (OMIM: 156569) PREDICTED: methylated- ( 207) 1420 311.2 7.4e-85
NP_002403 (OMIM: 156569) methylated-DNA--protein-c ( 238) 1420 311.3 8.3e-85
XP_016871764 (OMIM: 156569) PREDICTED: methylated- ( 148) 1027 227.3 9.8e-60


>>XP_005252739 (OMIM: 156569) PREDICTED: methylated-DNA-  (207 aa)
 initn: 1420 init1: 1420 opt: 1420  Z-score: 1644.4  bits: 311.2 E(85289): 7.4e-85
Smith-Waterman score: 1420; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KB6 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHEGHRLGKPG
              130       140       150       160       170       180

              190       200       
pF1KB6 LGGSSGLAGAWLKGAGATSGSPPAGRN
       :::::::::::::::::::::::::::
XP_005 LGGSSGLAGAWLKGAGATSGSPPAGRN
              190       200       

>>NP_002403 (OMIM: 156569) methylated-DNA--protein-cyste  (238 aa)
 initn: 1420 init1: 1420 opt: 1420  Z-score: 1643.6  bits: 311.3 E(85289): 8.3e-85
Smith-Waterman score: 1420; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:32-238)

                                             10        20        30
pF1KB6                               MDKDCEMKRTTLDSPLGKLELSGCEQGLHE
                                     ::::::::::::::::::::::::::::::
NP_002 LGQPAPLERFASRRPQVLAVRTVCDLVLGKMDKDCEMKRTTLDSPLGKLELSGCEQGLHE
              10        20        30        40        50        60 

               40        50        60        70        80        90
pF1KB6 IKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQ
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KB6 QESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVC
             130       140       150       160       170       180 

              160       170       180       190       200       
pF1KB6 SSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN
             190       200       210       220       230        

>>XP_016871764 (OMIM: 156569) PREDICTED: methylated-DNA-  (148 aa)
 initn: 1027 init1: 1027 opt: 1027  Z-score: 1193.4  bits: 227.3 E(85289): 9.8e-60
Smith-Waterman score: 1027; 100.0% identity (100.0% similar) in 148 aa overlap (60-207:1-148)

      30        40        50        60        70        80         
pF1KB6 EIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVF
                                     ::::::::::::::::::::::::::::::
XP_016                               MQCTAWLNAYFHQPEAIEEFPVPALHHPVF
                                             10        20        30

      90       100       110       120       130       140         
pF1KB6 QQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVV
               40        50        60        70        80        90

     150       160       170       180       190       200       
pF1KB6 CSSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN
              100       110       120       130       140        




207 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:49:37 2016 done: Fri Nov  4 11:49:37 2016
 Total Scan time:  5.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]