FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6939, 208 aa
  1>>>pF1KB6939 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8932+/-0.000702; mu= 8.3617+/- 0.043
 mean_var=149.7183+/-31.694, 0's: 0 Z-trim(114.7): 83  B-trim: 0 in 0/54
 Lambda= 0.104818
 statistics sampled from 15215 (15300) to 15215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS10003.1 CRIP2 gene_id:1397|Hs108|chr14         ( 208) 1528 241.6 2.7e-64
CCDS59246.1 CRIP2 gene_id:1397|Hs108|chr14         ( 282) 1423 225.8   2e-59
CCDS4894.2 CRIP3 gene_id:401262|Hs108|chr6         ( 204)  985 159.4 1.4e-39
CCDS10004.1 CRIP1 gene_id:1396|Hs108|chr14         (  77)  427 74.7 1.7e-14


>>CCDS10003.1 CRIP2 gene_id:1397|Hs108|chr14              (208 aa)
 initn: 1528 init1: 1528 opt: 1528  Z-score: 1267.8  bits: 241.6 E(32554): 2.7e-64
Smith-Waterman score: 1528; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB6 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG
              130       140       150       160       170       180

              190       200        
pF1KB6 ILFGPKGVNTGAVGSYIYDRDPEGKVQP
       ::::::::::::::::::::::::::::
CCDS10 ILFGPKGVNTGAVGSYIYDRDPEGKVQP
              190       200        

>>CCDS59246.1 CRIP2 gene_id:1397|Hs108|chr14              (282 aa)
 initn: 1423 init1: 1423 opt: 1423  Z-score: 1180.2  bits: 225.8 E(32554): 2e-59
Smith-Waterman score: 1423; 100.0% identity (100.0% similar) in 194 aa overlap (15-208:89-282)

                               10        20        30        40    
pF1KB6                 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGH
                                     ::::::::::::::::::::::::::::::
CCDS59 EPSQDHHESQEHRGPLVGSQTCLVHQAEGTAEKVSSLGKDWHKFCLKCERCSKTLTPGGH
       60        70        80        90       100       110        

           50        60        70        80        90       100    
pF1KB6 AEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKAS
      120       130       140       150       160       170        

          110       120       130       140       150       160    
pF1KB6 GPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGG
      180       190       200       210       220       230        

          170       180       190       200        
pF1KB6 HAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
      240       250       260       270       280  

>>CCDS4894.2 CRIP3 gene_id:401262|Hs108|chr6              (204 aa)
 initn: 959 init1: 480 opt: 985  Z-score: 824.1  bits: 159.4 E(32554): 1.4e-39
Smith-Waterman score: 985; 63.3% identity (80.9% similar) in 199 aa overlap (1-199:1-197)

               10        20        30        40        50        60
pF1KB6 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT
       :.  ::.:.. :.::::::::::.::.:::::::: . :.:::::::.:.:.::::::..
CCDS48 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFT
       ::::.::::::.:::.:. : . .:  : :.  :.. .  :  .: :.: .    . :::
CCDS48 LFGPRGVNIGGVGSYLYNPP-TPSPGCTTPLS-PSSFSPPRPRTGLPQGKKSPPHMKTFT
               70        80         90        100       110        

              130       140       150       160       170       180
pF1KB6 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG
       :: . :: :.. ::::::: :::..::::::::.:: :::: :.:::::: :::: ::::
CCDS48 GETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYG
      120       130       140       150       160       170        

              190       200        
pF1KB6 ILFGPKGVNTGAVGSYIYDRDPEGKVQP
        :::::::: : :: ::::         
CCDS48 YLFGPKGVNIGDVGCYIYDPVKIKFK  
      180       190       200      

>>CCDS10004.1 CRIP1 gene_id:1396|Hs108|chr14              (77 aa)
 initn: 489 init1: 427 opt: 427  Z-score: 373.6  bits: 74.7 E(32554): 1.7e-14
Smith-Waterman score: 427; 68.5% identity (91.8% similar) in 73 aa overlap (126-198:4-76)

         100       110       120       130       140       150     
pF1KB6 ARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCER
                                     ::.:.:.:::::.:::::::::::::.::.
CCDS10                            MPKCPKCNKEVYFAERVTSLGKDWHRPCLKCEK
                                          10        20        30   

         160       170       180       190       200        
pF1KB6 CGKTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
       :::::: ::::::.:.:::..:::. .::::: . :.. :. .          
CCDS10 CGKTLTSGGHAEHEGKPYCNHPCYAAMFGPKGFGRGGAESHTFK         
            40        50        60        70                




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:30:13 2016 done: Sat Nov  5 14:30:14 2016
 Total Scan time:  2.230 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]