FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6941, 209 aa
  1>>>pF1KB6941 209 - 209 aa - 209 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2580+/-0.000894; mu= 6.1565+/- 0.054
 mean_var=146.7397+/-29.165, 0's: 0 Z-trim(110.5): 9  B-trim: 12 in 1/52
 Lambda= 0.105877
 statistics sampled from 11644 (11646) to 11644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.358), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS4560.1 GMNN gene_id:51053|Hs108|chr6           ( 209) 1328 213.7 6.6e-56


>>CCDS4560.1 GMNN gene_id:51053|Hs108|chr6                (209 aa)
 initn: 1328 init1: 1328 opt: 1328  Z-score: 1117.2  bits: 213.7 E(32554): 6.6e-56
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
              130       140       150       160       170       180

              190       200         
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
       :::::::::::::::::::::::::::::
CCDS45 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
              190       200         




209 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:39:28 2016 done: Fri Nov  4 11:39:29 2016
 Total Scan time:  1.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]