Result of FASTA (omim) for
pF1KB6941
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6941, 209 aa
1>>>pF1KB6941 209 - 209 aa - 209 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0378+/-0.000382; mu= 7.6099+/- 0.024
mean_var=158.4794+/-31.600, 0's: 0 Z-trim(118.4): 8 B-trim: 1011 in 1/54
Lambda= 0.101880
statistics sampled from 31312 (31320) to 31312 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.367), width: 16
Scan time: 5.060
The best scores are: opt bits E(85289)
NP_056979 (OMIM: 602842,616835) geminin [Homo sapi ( 209) 1328 206.2 3.1e-53
NP_001238918 (OMIM: 602842,616835) geminin [Homo s ( 209) 1328 206.2 3.1e-53
NP_001238919 (OMIM: 602842,616835) geminin [Homo s ( 209) 1328 206.2 3.1e-53
NP_001238920 (OMIM: 602842,616835) geminin [Homo s ( 209) 1328 206.2 3.1e-53
XP_005249216 (OMIM: 602842,616835) PREDICTED: gemi ( 209) 1328 206.2 3.1e-53
XP_011512953 (OMIM: 602842,616835) PREDICTED: gemi ( 203) 1221 190.5 1.6e-48
XP_016864928 (OMIM: 614086) PREDICTED: multicilin ( 254) 194 39.6 0.0053
NP_001177716 (OMIM: 614086) multicilin [Homo sapie ( 385) 194 39.8 0.0071
>>NP_056979 (OMIM: 602842,616835) geminin [Homo sapiens] (209 aa)
initn: 1328 init1: 1328 opt: 1328 Z-score: 1076.8 bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
130 140 150 160 170 180
190 200
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
:::::::::::::::::::::::::::::
NP_056 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
190 200
>>NP_001238918 (OMIM: 602842,616835) geminin [Homo sapie (209 aa)
initn: 1328 init1: 1328 opt: 1328 Z-score: 1076.8 bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
130 140 150 160 170 180
190 200
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
:::::::::::::::::::::::::::::
NP_001 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
190 200
>>NP_001238919 (OMIM: 602842,616835) geminin [Homo sapie (209 aa)
initn: 1328 init1: 1328 opt: 1328 Z-score: 1076.8 bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
130 140 150 160 170 180
190 200
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
:::::::::::::::::::::::::::::
NP_001 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
190 200
>>NP_001238920 (OMIM: 602842,616835) geminin [Homo sapie (209 aa)
initn: 1328 init1: 1328 opt: 1328 Z-score: 1076.8 bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
130 140 150 160 170 180
190 200
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
:::::::::::::::::::::::::::::
NP_001 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
190 200
>>XP_005249216 (OMIM: 602842,616835) PREDICTED: geminin (209 aa)
initn: 1328 init1: 1328 opt: 1328 Z-score: 1076.8 bits: 206.2 E(85289): 3.1e-53
Smith-Waterman score: 1328; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
130 140 150 160 170 180
190 200
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
:::::::::::::::::::::::::::::
XP_005 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
190 200
>>XP_011512953 (OMIM: 602842,616835) PREDICTED: geminin (203 aa)
initn: 1221 init1: 1221 opt: 1221 Z-score: 992.0 bits: 190.5 E(85289): 1.6e-48
Smith-Waterman score: 1221; 99.5% identity (100.0% similar) in 193 aa overlap (17-209:11-203)
10 20 30 40 50 60
pF1KB6 MNPSMKQKQEEIKENIKNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
.:::::::::::::::::::::::::::::::::::::::::::
XP_011 MGLKQNCFYYQNSSVPRRTLKMIQPSASGSLVGRENELSAGLSKRKHRNDHLTS
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET
120 130 140 150 160 170
190 200
pF1KB6 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
:::::::::::::::::::::::::::::
XP_011 VEDSLVEDSEIGTCAEGTVSSSTDAKPCI
180 190 200
>>XP_016864928 (OMIM: 614086) PREDICTED: multicilin isof (254 aa)
initn: 194 init1: 194 opt: 194 Z-score: 174.9 bits: 39.6 E(85289): 0.0053
Smith-Waterman score: 194; 44.6% identity (80.0% similar) in 65 aa overlap (94-158:46-110)
70 80 90 100 110 120
pF1KB6 SPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKLHKE
: :::::::.. ..:: .:: ::..::
XP_016 CDISPFGPCLSPPLDPRALQSPPLRPPDVPPPEQYWKEVADQNQRALGDALVENNQLHVT
20 30 40 50 60 70
130 140 150 160 170 180
pF1KB6 IEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEETVED
. ::..::: ::..: .: :.: .....: ....:
XP_016 LTQKQEEIASLKERNVQLKELASRTRHLASVLDKLMITQSRDCGAAAEPFLLKAKAKRSL
80 90 100 110 120 130
190 200
pF1KB6 SLVEDSEIGTCAEGTVSSSTDAKPCI
XP_016 EELVSAAGQDCAEVDAILREISERCDEALQSRDPKRPRLLPEPANTDTRPGNLHGAFRGL
140 150 160 170 180 190
>>NP_001177716 (OMIM: 614086) multicilin [Homo sapiens] (385 aa)
initn: 222 init1: 194 opt: 194 Z-score: 172.6 bits: 39.8 E(85289): 0.0071
Smith-Waterman score: 194; 44.6% identity (80.0% similar) in 65 aa overlap (94-158:177-241)
70 80 90 100 110 120
pF1KB6 SPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKLHKE
: :::::::.. ..:: .:: ::..::
NP_001 CDISPFGPCLSPPLDPRALQSPPLRPPDVPPPEQYWKEVADQNQRALGDALVENNQLHVT
150 160 170 180 190 200
130 140 150 160 170 180
pF1KB6 IEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEETVED
. ::..::: ::..: .: :.: .....: ....:
NP_001 LTQKQEEIASLKERNVQLKELASRTRHLASVLDKLMITQSRDCGAAAEPFLLKAKAKRSL
210 220 230 240 250 260
190 200
pF1KB6 SLVEDSEIGTCAEGTVSSSTDAKPCI
NP_001 EELVSAAGQDCAEVDAILREISERCDEALQSRDPKRPRLLPEPANTDTRPGNLHGAFRGL
270 280 290 300 310 320
209 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:39:29 2016 done: Fri Nov 4 11:39:30 2016
Total Scan time: 5.060 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]