Result of FASTA (ccds) for
pF1KB6942
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6942, 229 aa
1>>>pF1KB6942 229 - 229 aa - 229 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1081+/-0.000777; mu= 8.4635+/- 0.047
mean_var=148.7332+/-28.829, 0's: 0 Z-trim(114.1): 10 B-trim: 0 in 0/53
Lambda= 0.105165
statistics sampled from 14720 (14729) to 14720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.452), width: 16
Scan time: 1.680
The best scores are: opt bits E(32554)
CCDS4403.1 CLTB gene_id:1212|Hs108|chr5 ( 229) 1515 240.4 7.5e-64
CCDS4402.1 CLTB gene_id:1212|Hs108|chr5 ( 211) 1050 169.8 1.2e-42
CCDS43802.1 CLTA gene_id:1211|Hs108|chr9 ( 236) 927 151.2 5.5e-37
CCDS55306.1 CLTA gene_id:1211|Hs108|chr9 ( 230) 790 130.4 9.7e-31
CCDS6601.1 CLTA gene_id:1211|Hs108|chr9 ( 248) 648 108.9 3.1e-24
CCDS6600.1 CLTA gene_id:1211|Hs108|chr9 ( 218) 576 97.9 5.6e-21
CCDS83364.1 CLTA gene_id:1211|Hs108|chr9 ( 196) 355 64.3 6.4e-11
>>CCDS4403.1 CLTB gene_id:1212|Hs108|chr5 (229 aa)
initn: 1515 init1: 1515 opt: 1515 Z-score: 1259.8 bits: 240.4 E(32554): 7.5e-64
Smith-Waterman score: 1515; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB6 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFV
130 140 150 160 170 180
190 200 210 220
pF1KB6 KESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
190 200 210 220
>>CCDS4402.1 CLTB gene_id:1212|Hs108|chr5 (211 aa)
initn: 1151 init1: 1047 opt: 1050 Z-score: 879.0 bits: 169.8 E(32554): 1.2e-42
Smith-Waterman score: 1348; 92.1% identity (92.1% similar) in 229 aa overlap (1-229:1-211)
10 20 30 40 50 60
pF1KB6 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFV
::::::::::::::::::::::::::::::::::: :::::::
CCDS44 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNR------------------ASEEAFV
130 140 150 160
190 200 210 220
pF1KB6 KESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
170 180 190 200 210
>>CCDS43802.1 CLTA gene_id:1211|Hs108|chr9 (236 aa)
initn: 908 init1: 770 opt: 927 Z-score: 777.5 bits: 151.2 E(32554): 5.5e-37
Smith-Waterman score: 927; 64.7% identity (84.2% similar) in 215 aa overlap (13-227:21-234)
10 20 30 40 50
pF1KB6 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
.:. :.:::::::::::::::::::::::.:. :.
CCDS43 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
.: :: .: . . ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS43 GP-QPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGY
::. ::: :. : ::.::: :.:::: ::.::..:.: :::.::.:::.:: ::.:::
CCDS43 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGY
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 VASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
::.:::::.. : .::::::.::.::::::::::: :::::.::::.::::.::
CCDS43 VAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
180 190 200 210 220 230
>>CCDS55306.1 CLTA gene_id:1211|Hs108|chr9 (230 aa)
initn: 791 init1: 387 opt: 790 Z-score: 665.3 bits: 130.4 E(32554): 9.7e-31
Smith-Waterman score: 790; 58.6% identity (78.1% similar) in 215 aa overlap (13-227:21-228)
10 20 30 40 50
pF1KB6 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
.:. :.:::::::::::::::::::::::.:. :.
CCDS55 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
.: :: .: . . ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS55 GP-QPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGY
::. ::: :. : ::.::: :.:::: ::.::..:.: :: ..: ..
CCDS55 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTN----INHPCYSL--E
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 VASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
:.:::::.. : .::::::.::.::::::::::: :::::.::::.::::.::
CCDS55 QAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
180 190 200 210 220 230
>>CCDS6601.1 CLTA gene_id:1211|Hs108|chr9 (248 aa)
initn: 920 init1: 490 opt: 648 Z-score: 548.4 bits: 108.9 E(32554): 3.1e-24
Smith-Waterman score: 893; 61.2% identity (79.7% similar) in 227 aa overlap (13-227:21-246)
10 20 30 40 50
pF1KB6 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
.:. :.:::::::::::::::::::::::.:. :.
CCDS66 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
.: :: .: . . ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS66 GP-QPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGY
::. ::: :. : ::.::: :.:::: ::.::..:.: :::.::.:::.:: ::.:::
CCDS66 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGY
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 V------------ASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLM
: :.:::::.. : .::::::.::.::::::::::: :::::.::::.
CCDS66 VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLI
180 190 200 210 220 230
pF1KB6 SLKQTPLSR
::::.::
CCDS66 SLKQAPLVH
240
>>CCDS6600.1 CLTA gene_id:1211|Hs108|chr9 (218 aa)
initn: 597 init1: 417 opt: 576 Z-score: 490.2 bits: 97.9 E(32554): 5.6e-21
Smith-Waterman score: 785; 58.6% identity (76.3% similar) in 215 aa overlap (13-227:21-216)
10 20 30 40 50
pF1KB6 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
.:. :.:::::::::::::::::::::::.:. :.
CCDS66 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
.: :: .: . . ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS66 GP-QPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGY
::. ::: :. : ::.::: :.:::: ::.::..:.: :::
CCDS66 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR-----------------
120 130 140 150 160
180 190 200 210 220
pF1KB6 VASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
:.:::::.. : .::::::.::.::::::::::: :::::.::::.::::.::
CCDS66 -AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
170 180 190 200 210
>>CCDS83364.1 CLTA gene_id:1211|Hs108|chr9 (196 aa)
initn: 723 init1: 280 opt: 355 Z-score: 309.6 bits: 64.3 E(32554): 6.4e-11
Smith-Waterman score: 571; 48.0% identity (59.9% similar) in 227 aa overlap (13-227:21-194)
10 20 30 40 50
pF1KB6 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
.:. :.:::::::::::::::::::::::.:. :.
CCDS83 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
.: : : ::
CCDS83 GPQPHGEPPG-------------------GP-----------------------------
70
120 130 140 150 160 170
pF1KB6 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGY
:: :. : ::.::: :.:::: ::.::..:.: :::.::.:::.:: ::.:::
CCDS83 -----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGY
80 90 100 110 120
180 190 200 210 220
pF1KB6 V------------ASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLM
: :.:::::.. : .::::::.::.::::::::::: :::::.::::.
CCDS83 VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLI
130 140 150 160 170 180
pF1KB6 SLKQTPLSR
::::.::
CCDS83 SLKQAPLVH
190
229 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:38:11 2016 done: Fri Nov 4 11:38:11 2016
Total Scan time: 1.680 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]