FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6943, 183 aa
  1>>>pF1KB6943 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6096+/-0.000637; mu= 12.4095+/- 0.039
 mean_var=73.3590+/-14.877, 0's: 0 Z-trim(112.0): 5  B-trim: 753 in 1/50
 Lambda= 0.149743
 statistics sampled from 12809 (12814) to 12809 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.394), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS55744.1 AKIP1 gene_id:56672|Hs108|chr11        ( 183) 1223 272.4 1.1e-73
CCDS55743.1 AKIP1 gene_id:56672|Hs108|chr11        ( 183)  739 167.9 3.2e-42
CCDS7793.1 AKIP1 gene_id:56672|Hs108|chr11         ( 210)  725 164.9 2.9e-41


>>CCDS55744.1 AKIP1 gene_id:56672|Hs108|chr11             (183 aa)
 initn: 1223 init1: 1223 opt: 1223  Z-score: 1436.6  bits: 272.4 E(32554): 1.1e-73
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLV
              130       140       150       160       170       180

          
pF1KB6 FPV
       :::
CCDS55 FPV
          

>>CCDS55743.1 AKIP1 gene_id:56672|Hs108|chr11             (183 aa)
 initn: 730 init1: 730 opt: 739  Z-score: 871.5  bits: 167.9 E(32554): 3.2e-42
Smith-Waterman score: 912; 74.3% identity (74.3% similar) in 210 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
               10        20        30        40        50        60

               70                                   80        90   
pF1KB6 KQPAAGPQRVLPGE---------------------------KYYSSVPEEGGATHVYRYH
       ::::::::::::::                           :::::::::::::::::::
CCDS55 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB6 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
       ::::::::::::::::                           :::::::::::::::::
CCDS55 RGESKLHMCLDIGNGQ---------------------------AENISKDLYIEVYPGTY
              130                                  140       150   

           160       170       180   
pF1KB6 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
       ::::::::::::::::::::::::::::::
CCDS55 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
           160       170       180   

>>CCDS7793.1 AKIP1 gene_id:56672|Hs108|chr11              (210 aa)
 initn: 1212 init1: 725 opt: 725  Z-score: 854.2  bits: 164.9 E(32554): 2.9e-41
Smith-Waterman score: 1159; 87.1% identity (87.1% similar) in 210 aa overlap (1-183:1-210)

               10        20        30        40        50        60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
               10        20        30        40        50        60

               70                                   80        90   
pF1KB6 KQPAAGPQRVLPGE---------------------------KYYSSVPEEGGATHVYRYH
       ::::::::::::::                           :::::::::::::::::::
CCDS77 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
               70        80        90       100       110       120

           100       110       120       130       140       150   
pF1KB6 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
              130       140       150       160       170       180

           160       170       180   
pF1KB6 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
       ::::::::::::::::::::::::::::::
CCDS77 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
              190       200       210




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:37:14 2016 done: Fri Nov  4 11:37:14 2016
 Total Scan time:  1.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]