Result of FASTA (omim) for
pF1KB6943
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6943, 183 aa
1>>>pF1KB6943 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5460+/-0.000295; mu= 12.7645+/- 0.018
mean_var=77.8690+/-15.773, 0's: 0 Z-trim(118.9): 6 B-trim: 0 in 0/54
Lambda= 0.145342
statistics sampled from 32237 (32243) to 32237 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.378), width: 16
Scan time: 5.030
The best scores are: opt bits E(85289)
NP_001193575 (OMIM: 609191) A-kinase-interacting p ( 183) 1223 265.0 4.9e-71
XP_016873501 (OMIM: 609191) PREDICTED: A-kinase-in ( 168) 929 203.3 1.6e-52
NP_001193577 (OMIM: 609191) A-kinase-interacting p ( 156) 755 166.8 1.5e-41
NP_001193576 (OMIM: 609191) A-kinase-interacting p ( 183) 739 163.5 1.7e-40
XP_016873500 (OMIM: 609191) PREDICTED: A-kinase-in ( 210) 725 160.6 1.5e-39
NP_065693 (OMIM: 609191) A-kinase-interacting prot ( 210) 725 160.6 1.5e-39
>>NP_001193575 (OMIM: 609191) A-kinase-interacting prote (183 aa)
initn: 1223 init1: 1223 opt: 1223 Z-score: 1396.3 bits: 265.0 E(85289): 4.9e-71
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLV
130 140 150 160 170 180
pF1KB6 FPV
:::
NP_001 FPV
>>XP_016873501 (OMIM: 609191) PREDICTED: A-kinase-intera (168 aa)
initn: 929 init1: 929 opt: 929 Z-score: 1063.7 bits: 203.3 E(85289): 1.6e-52
Smith-Waterman score: 929; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLV
::::::::::::::::
XP_016 GGSYQISEHAPEASQPVSTELLTHWVSPPLQLHEPVDMVLRGLFELSL
130 140 150 160
>>NP_001193577 (OMIM: 609191) A-kinase-interacting prote (156 aa)
initn: 749 init1: 749 opt: 755 Z-score: 867.0 bits: 166.8 E(85289): 1.5e-41
Smith-Waterman score: 976; 85.2% identity (85.2% similar) in 183 aa overlap (1-183:1-156)
10 20 30 40 50 60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGP
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQPAAGPQRVLPGEKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQ-----------
70 80 90 100
130 140 150 160 170 180
pF1KB6 GGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLV
::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------------AENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLV
110 120 130 140 150
pF1KB6 FPV
:::
NP_001 FPV
>>NP_001193576 (OMIM: 609191) A-kinase-interacting prote (183 aa)
initn: 730 init1: 730 opt: 739 Z-score: 847.8 bits: 163.5 E(85289): 1.7e-40
Smith-Waterman score: 912; 74.3% identity (74.3% similar) in 210 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
10 20 30 40 50 60
70 80 90
pF1KB6 KQPAAGPQRVLPGE---------------------------KYYSSVPEEGGATHVYRYH
:::::::::::::: :::::::::::::::::::
NP_001 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
:::::::::::::::: :::::::::::::::::
NP_001 RGESKLHMCLDIGNGQ---------------------------AENISKDLYIEVYPGTY
130 140 150
160 170 180
pF1KB6 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
::::::::::::::::::::::::::::::
NP_001 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
160 170 180
>>XP_016873500 (OMIM: 609191) PREDICTED: A-kinase-intera (210 aa)
initn: 1212 init1: 725 opt: 725 Z-score: 831.1 bits: 160.6 E(85289): 1.5e-39
Smith-Waterman score: 1159; 87.1% identity (87.1% similar) in 210 aa overlap (1-183:1-210)
10 20 30 40 50 60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
10 20 30 40 50 60
70 80 90
pF1KB6 KQPAAGPQRVLPGE---------------------------KYYSSVPEEGGATHVYRYH
:::::::::::::: :::::::::::::::::::
XP_016 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
130 140 150 160 170 180
160 170 180
pF1KB6 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
::::::::::::::::::::::::::::::
XP_016 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
190 200 210
>>NP_065693 (OMIM: 609191) A-kinase-interacting protein (210 aa)
initn: 1212 init1: 725 opt: 725 Z-score: 831.1 bits: 160.6 E(85289): 1.5e-39
Smith-Waterman score: 1159; 87.1% identity (87.1% similar) in 210 aa overlap (1-183:1-210)
10 20 30 40 50 60
pF1KB6 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
10 20 30 40 50 60
70 80 90
pF1KB6 KQPAAGPQRVLPGE---------------------------KYYSSVPEEGGATHVYRYH
:::::::::::::: :::::::::::::::::::
NP_065 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
130 140 150 160 170 180
160 170 180
pF1KB6 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
::::::::::::::::::::::::::::::
NP_065 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
190 200 210
183 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:37:15 2016 done: Fri Nov 4 11:37:15 2016
Total Scan time: 5.030 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]