Result of FASTA (ccds) for
pF1KB6944
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6944, 231 aa
1>>>pF1KB6944 231 - 231 aa - 231 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2918+/-0.000674; mu= 13.8376+/- 0.041
mean_var=57.8120+/-11.335, 0's: 0 Z-trim(109.2): 14 B-trim: 0 in 0/52
Lambda= 0.168681
statistics sampled from 10733 (10740) to 10733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.33), width: 16
Scan time: 2.280
The best scores are: opt bits E(32554)
CCDS12602.1 PAFAH1B3 gene_id:5050|Hs108|chr19 ( 231) 1601 397.4 4.2e-111
CCDS8380.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 229) 1040 260.8 5.2e-70
CCDS53714.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 202) 722 183.4 9.1e-47
CCDS53715.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 155) 714 181.5 2.8e-46
CCDS53713.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 132) 693 176.3 8.3e-45
>>CCDS12602.1 PAFAH1B3 gene_id:5050|Hs108|chr19 (231 aa)
initn: 1601 init1: 1601 opt: 1601 Z-score: 2108.2 bits: 397.4 E(32554): 4.2e-111
Smith-Waterman score: 1601; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)
10 20 30 40 50 60
pF1KB6 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
190 200 210 220 230
>>CCDS8380.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (229 aa)
initn: 1047 init1: 1031 opt: 1040 Z-score: 1370.4 bits: 260.8 E(32554): 5.2e-70
Smith-Waterman score: 1040; 65.3% identity (88.0% similar) in 216 aa overlap (3-218:4-219)
10 20 30 40 50
pF1KB6 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
:. :::. : ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS83 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
:::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS83 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
::::.: :::::...::::::::..:::::.:: .::.:....: ...::.: :::
CCDS83 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 HSDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
::::.:: :::.:.:::. ::. .:. :: :...:: .
CCDS83 HSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQTTIA
190 200 210 220
>>CCDS53714.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (202 aa)
initn: 722 init1: 722 opt: 722 Z-score: 953.1 bits: 183.4 E(32554): 9.1e-47
Smith-Waterman score: 722; 72.6% identity (91.1% similar) in 135 aa overlap (3-137:4-138)
10 20 30 40 50
pF1KB6 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
:. :::. : ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
:::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
::::.: :::::...:::
CCDS53 IVQLINTRQPQAKIIVLGKAAASKYSISEIVRLEQGSVNWSIGTYPDDTPATTRPAILQL
130 140 150 160 170 180
>>CCDS53715.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (155 aa)
initn: 714 init1: 714 opt: 714 Z-score: 944.4 bits: 181.5 E(32554): 2.8e-46
Smith-Waterman score: 714; 72.4% identity (91.0% similar) in 134 aa overlap (3-136:4-137)
10 20 30 40 50
pF1KB6 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
:. :::. : ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
:::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
::::.: :::::...::
CCDS53 IVQLINTRQPQAKIIVLIIYWQDEQDYHERKVQMD
130 140 150
>>CCDS53713.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (132 aa)
initn: 693 init1: 693 opt: 693 Z-score: 917.9 bits: 176.3 E(32554): 8.3e-45
Smith-Waterman score: 693; 73.6% identity (90.7% similar) in 129 aa overlap (3-131:4-132)
10 20 30 40 50
pF1KB6 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
:. :::. : ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
:::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
::::.: :::::
CCDS53 IVQLINTRQPQA
130
231 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:33:42 2016 done: Fri Nov 4 11:33:43 2016
Total Scan time: 2.280 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]