FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6955, 212 aa
  1>>>pF1KB6955 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9288+/-0.000346; mu= 16.1981+/- 0.021
 mean_var=78.7886+/-15.864, 0's: 0 Z-trim(116.4): 112  B-trim: 739 in 2/52
 Lambda= 0.144492
 statistics sampled from 27389 (27540) to 27389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.323), width:  16
 Scan time:  4.670

The best scores are:                                      opt bits E(85289)
NP_005183 (OMIM: 123832) cyclin-dependent kinase i ( 212) 1448 310.9 9.9e-85
NP_001317102 (OMIM: 123832) cyclin-dependent kinas ( 203) 1267 273.1 2.2e-73
NP_001124323 (OMIM: 123832) cyclin-dependent kinas ( 172) 1103 238.9 3.8e-63


>>NP_005183 (OMIM: 123832) cyclin-dependent kinase inhib  (212 aa)
 initn: 1448 init1: 1448 opt: 1448  Z-score: 1642.1  bits: 310.9 E(85289): 9.9e-85
Smith-Waterman score: 1448; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB6 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
              130       140       150       160       170       180

              190       200       210  
pF1KB6 QTIKQYNYLHEFRDKLAAHLSSRDSQSRSVSR
       ::::::::::::::::::::::::::::::::
NP_005 QTIKQYNYLHEFRDKLAAHLSSRDSQSRSVSR
              190       200       210  

>>NP_001317102 (OMIM: 123832) cyclin-dependent kinase in  (203 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1438.5  bits: 273.1 E(85289): 2.2e-73
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB6 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
              130       140       150       160       170       180

              190       200       210  
pF1KB6 QTIKQYNYLHEFRDKLAAHLSSRDSQSRSVSR
       ::::                            
NP_001 QTIKDLPTSQFLPQSVLGMDPLT         
              190       200            

>>NP_001124323 (OMIM: 123832) cyclin-dependent kinase in  (172 aa)
 initn: 1154 init1: 1103 opt: 1103  Z-score: 1254.6  bits: 238.9 E(85289): 3.8e-63
Smith-Waterman score: 1103; 100.0% identity (100.0% similar) in 162 aa overlap (51-212:11-172)

               30        40        50        60        70        80
pF1KB6 EDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCT
                                     ::::::::::::::::::::::::::::::
NP_001                     MKPPSSIQTSCKFKDVRRNVQKDTEELKSCGIQDIFVFCT
                                   10        20        30        40

               90       100       110       120       130       140
pF1KB6 RGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHC
               50        60        70        80        90       100

              150       160       170       180       190       200
pF1KB6 YGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRDKLAAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRDKLAAHL
              110       120       130       140       150       160

              210  
pF1KB6 SSRDSQSRSVSR
       ::::::::::::
NP_001 SSRDSQSRSVSR
              170  




212 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:20:13 2016 done: Sat Nov  5 18:20:13 2016
 Total Scan time:  4.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]