FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6956, 238 aa
  1>>>pF1KB6956 238 - 238 aa - 238 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5296+/-0.000926; mu= 1.5158+/- 0.057
 mean_var=257.7390+/-52.758, 0's: 0 Z-trim(114.3): 136  B-trim: 0 in 0/53
 Lambda= 0.079888
 statistics sampled from 14759 (14900) to 14759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.458), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS33183.1 SRSF7 gene_id:6432|Hs108|chr2          ( 238) 1623 199.3 1.9e-51
CCDS56115.1 SRSF7 gene_id:6432|Hs108|chr2          ( 226) 1471 181.7 3.5e-46
CCDS4823.1 SRSF3 gene_id:6428|Hs108|chr6           ( 164)  557 76.2 1.4e-14


>>CCDS33183.1 SRSF7 gene_id:6432|Hs108|chr2               (238 aa)
 initn: 1623 init1: 1623 opt: 1623  Z-score: 1037.0  bits: 199.3 E(32554): 1.9e-51
Smith-Waterman score: 1623; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB6 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
              190       200       210       220       230        

>>CCDS56115.1 SRSF7 gene_id:6432|Hs108|chr2               (226 aa)
 initn: 1894 init1: 1456 opt: 1471  Z-score: 942.6  bits: 181.7 E(32554): 3.5e-46
Smith-Waterman score: 1511; 95.0% identity (95.0% similar) in 238 aa overlap (1-238:1-226)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSR
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB6 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPERMD
       :::::::::::::::::::::::::::::::            :::::::::::::::
CCDS56 SGSIKGSRYFQSPSRSRSRSRSISRPRSSRS------------PSGSPRRSASPERMD
              190       200       210                   220      

>>CCDS4823.1 SRSF3 gene_id:6428|Hs108|chr6                (164 aa)
 initn: 769 init1: 427 opt: 557  Z-score: 375.0  bits: 76.2 E(32554): 1.4e-14
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (10-170:9-163)

               10        20        30        40        50        60
pF1KB6 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
CCDS48  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                10        20        30        40        50         

               70        80        90          100       110       
pF1KB6 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
CCDS48 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
      60        70        80         90       100                  

       120       130       140       150        160       170      
pF1KB6 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
CCDS48 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
     110       120       130       140       150       160         

        180       190       200       210       220       230      
pF1KB6 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER




238 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:31:27 2016 done: Sat Nov  5 14:31:27 2016
 Total Scan time:  2.160 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]