FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6957, 213 aa
  1>>>pF1KB6957 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8683+/-0.000602; mu= 12.6082+/- 0.037
 mean_var=92.6130+/-18.293, 0's: 0 Z-trim(114.7): 39  B-trim: 6 in 1/50
 Lambda= 0.133272
 statistics sampled from 15213 (15255) to 15213 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.469), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS13809.1 IGLL1 gene_id:3543|Hs108|chr22         ( 213) 1461 289.8 8.4e-79
CCDS54506.1 IGLL5 gene_id:100423062|Hs108|chr22    ( 214) 1062 213.1   1e-55
CCDS13810.1 IGLL1 gene_id:3543|Hs108|chr22         (  84)  479 100.7 2.8e-22


>>CCDS13809.1 IGLL1 gene_id:3543|Hs108|chr22              (213 aa)
 initn: 1461 init1: 1461 opt: 1461  Z-score: 1528.3  bits: 289.8 E(32554): 8.4e-79
Smith-Waterman score: 1461; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB6 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLS
              130       140       150       160       170       180

              190       200       210   
pF1KB6 LTPEQWRSRRSYSCQVMHEGSTVEKTVAPAECS
       :::::::::::::::::::::::::::::::::
CCDS13 LTPEQWRSRRSYSCQVMHEGSTVEKTVAPAECS
              190       200       210   

>>CCDS54506.1 IGLL5 gene_id:100423062|Hs108|chr22         (214 aa)
 initn: 1066 init1: 752 opt: 1062  Z-score: 1113.6  bits: 213.1 E(32554): 1e-55
Smith-Waterman score: 1062; 73.8% identity (86.4% similar) in 214 aa overlap (1-213:1-214)

               10        20        30        40        50        60
pF1KB6 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
       ::: ::: : :.: : ::. ::::::::::::.:.:::::: .: ::    :::  ::::
CCDS54 MRPKTGQVGCETPEELGPGPRQRWPLLLLGLAMVAHGLLRPMVAPQSGDPDPGASVGSSR
               10        20        30        40        50        60

               70         80        90       100       110         
pF1KB6 SSLRSRWGRFLLQRGSWTG-PRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLF
       ::::: :::.::: .   . :::::::: :. .:. .:::.::..:::.::::.:.::::
CCDS54 SSLRSLWGRLLLQPSPQRADPRCWPRGFWSEPQSLCYVFGTGTKVTVLGQPKANPTVTLF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 PPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYL
       :::::::::::::::::..::::: .::.:::::.:.  ::: : :::::::::::::::
CCDS54 PPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYL
              130       140       150       160       170       180

     180       190       200       210   
pF1KB6 SLTPEQWRSRRSYSCQVMHEGSTVEKTVAPAECS
       :::::::.:.::::::: ::::::::::::.:::
CCDS54 SLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
              190       200       210    

>>CCDS13810.1 IGLL1 gene_id:3543|Hs108|chr22              (84 aa)
 initn: 479 init1: 479 opt: 479  Z-score: 513.5  bits: 100.7 E(32554): 2.8e-22
Smith-Waterman score: 479; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:1-69)

               10        20        30        40        50        60
pF1KB6 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFP
       :::::::::                                                   
CCDS13 SSLRSRWGRSAQGHPLGHSVPAVL                                    
               70        80                                        




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:22:31 2016 done: Fri Nov  4 11:22:31 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]