FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6961, 175 aa
  1>>>pF1KB6961 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6281+/- 0.001; mu= 10.1378+/- 0.060
 mean_var=52.8490+/-10.681, 0's: 0 Z-trim(101.8): 27  B-trim: 22 in 1/48
 Lambda= 0.176423
 statistics sampled from 6652 (6655) to 6652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.204), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS1927.1 TPRKB gene_id:51002|Hs108|chr2          ( 175) 1092 286.0 8.1e-78
CCDS82471.1 TPRKB gene_id:51002|Hs108|chr2         ( 214)  784 207.6 3.9e-54


>>CCDS1927.1 TPRKB gene_id:51002|Hs108|chr2               (175 aa)
 initn: 1092 init1: 1092 opt: 1092  Z-score: 1510.6  bits: 286.0 E(32554): 8.1e-78
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KB6 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
              130       140       150       160       170     

>>CCDS82471.1 TPRKB gene_id:51002|Hs108|chr2              (214 aa)
 initn: 1078 init1: 784 opt: 784  Z-score: 1085.3  bits: 207.6 E(32554): 3.9e-54
Smith-Waterman score: 958; 81.2% identity (81.2% similar) in 207 aa overlap (8-175:8-214)

               10        20        30        40                    
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTV-------------
              ::::::::::::::::::::::::::::::::::::::::             
CCDS82 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVFHSCCPGWSAMAR
               10        20        30        40        50        60

                                  50        60        70        80 
pF1KB6 --------------------------IVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
                                 ::::::::::::::::::::::::::::::::::
CCDS82 SWLTATSASRVQAIVLPQPPELLGLQIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
               70        80        90       100       110       120

              90       100       110       120       130       140 
pF1KB6 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
              130       140       150       160       170       180

             150       160       170     
pF1KB6 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
       ::::::::::::::::::::::::::::::::::
CCDS82 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
              190       200       210    




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:40:01 2016 done: Sat Nov  5 20:40:01 2016
 Total Scan time:  1.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]