Result of FASTA (omim) for
pF1KB6961
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6961, 175 aa
1>>>pF1KB6961 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9132+/-0.000412; mu= 14.6015+/- 0.026
mean_var=56.6947+/-11.427, 0's: 0 Z-trim(109.2): 24 B-trim: 120 in 1/51
Lambda= 0.170335
statistics sampled from 17371 (17388) to 17371 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.204), width: 16
Scan time: 5.190
The best scores are: opt bits E(85289)
NP_057142 (OMIM: 608680) EKC/KEOPS complex subunit ( 175) 1092 276.6 1.5e-74
XP_016859723 (OMIM: 608680) PREDICTED: EKC/KEOPS c ( 175) 1092 276.6 1.5e-74
NP_001317317 (OMIM: 608680) EKC/KEOPS complex subu ( 175) 1092 276.6 1.5e-74
NP_001317318 (OMIM: 608680) EKC/KEOPS complex subu ( 175) 1092 276.6 1.5e-74
NP_001317320 (OMIM: 608680) EKC/KEOPS complex subu ( 142) 784 200.8 7.5e-52
NP_001317321 (OMIM: 608680) EKC/KEOPS complex subu ( 142) 784 200.8 7.5e-52
NP_001317319 (OMIM: 608680) EKC/KEOPS complex subu ( 157) 784 200.8 8.1e-52
XP_011531179 (OMIM: 608680) PREDICTED: EKC/KEOPS c ( 214) 784 200.9 1.1e-51
XP_016859722 (OMIM: 608680) PREDICTED: EKC/KEOPS c ( 214) 784 200.9 1.1e-51
NP_001317316 (OMIM: 608680) EKC/KEOPS complex subu ( 214) 784 200.9 1.1e-51
XP_016859721 (OMIM: 608680) PREDICTED: EKC/KEOPS c ( 214) 784 200.9 1.1e-51
XP_006712090 (OMIM: 608680) PREDICTED: EKC/KEOPS c ( 214) 784 200.9 1.1e-51
XP_011531180 (OMIM: 608680) PREDICTED: EKC/KEOPS c ( 214) 784 200.9 1.1e-51
NP_001317315 (OMIM: 608680) EKC/KEOPS complex subu ( 214) 784 200.9 1.1e-51
>>NP_057142 (OMIM: 608680) EKC/KEOPS complex subunit TPR (175 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1459.6 bits: 276.6 E(85289): 1.5e-74
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
130 140 150 160 170
>>XP_016859723 (OMIM: 608680) PREDICTED: EKC/KEOPS compl (175 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1459.6 bits: 276.6 E(85289): 1.5e-74
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
130 140 150 160 170
>>NP_001317317 (OMIM: 608680) EKC/KEOPS complex subunit (175 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1459.6 bits: 276.6 E(85289): 1.5e-74
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
130 140 150 160 170
>>NP_001317318 (OMIM: 608680) EKC/KEOPS complex subunit (175 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1459.6 bits: 276.6 E(85289): 1.5e-74
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
130 140 150 160 170
>>NP_001317320 (OMIM: 608680) EKC/KEOPS complex subunit (142 aa)
initn: 877 init1: 784 opt: 784 Z-score: 1051.9 bits: 200.8 E(85289): 7.5e-52
Smith-Waterman score: 811; 81.1% identity (81.1% similar) in 175 aa overlap (1-175:1-142)
10 20 30 40 50 60
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
:::::::::::::: :::::::::::::
NP_001 MQLTHQLDLFPECR---------------------------------IVDPFQILVAANK
10 20
70 80 90 100 110 120
pF1KB6 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
30 40 50 60 70 80
130 140 150 160 170
pF1KB6 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
90 100 110 120 130 140
>>NP_001317321 (OMIM: 608680) EKC/KEOPS complex subunit (142 aa)
initn: 877 init1: 784 opt: 784 Z-score: 1051.9 bits: 200.8 E(85289): 7.5e-52
Smith-Waterman score: 811; 81.1% identity (81.1% similar) in 175 aa overlap (1-175:1-142)
10 20 30 40 50 60
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANK
:::::::::::::: :::::::::::::
NP_001 MQLTHQLDLFPECR---------------------------------IVDPFQILVAANK
10 20
70 80 90 100 110 120
pF1KB6 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQE
30 40 50 60 70 80
130 140 150 160 170
pF1KB6 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
90 100 110 120 130 140
>>NP_001317319 (OMIM: 608680) EKC/KEOPS complex subunit (157 aa)
initn: 784 init1: 784 opt: 784 Z-score: 1051.2 bits: 200.8 E(85289): 8.1e-52
Smith-Waterman score: 784; 100.0% identity (100.0% similar) in 128 aa overlap (48-175:30-157)
20 30 40 50 60 70
pF1KB6 LLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANKAVHLYKLGKMKTRTLST
::::::::::::::::::::::::::::::
NP_001 MARSWLTATSASRVQAIVLPQPPELLGLQIVDPFQILVAANKAVHLYKLGKMKTRTLST
10 20 30 40 50
80 90 100 110 120 130
pF1KB6 EIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLP
60 70 80 90 100 110
140 150 160 170
pF1KB6 EIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
::::::::::::::::::::::::::::::::::::::
NP_001 EIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
120 130 140 150
>>XP_011531179 (OMIM: 608680) PREDICTED: EKC/KEOPS compl (214 aa)
initn: 1078 init1: 784 opt: 784 Z-score: 1049.2 bits: 200.9 E(85289): 1.1e-51
Smith-Waterman score: 958; 81.2% identity (81.2% similar) in 207 aa overlap (8-175:8-214)
10 20 30 40
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTV-------------
::::::::::::::::::::::::::::::::::::::::
XP_011 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVFHSCCPGWSAMAR
10 20 30 40 50 60
50 60 70 80
pF1KB6 --------------------------IVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
::::::::::::::::::::::::::::::::::
XP_011 SWLTATSASRVQAIVLPQPPELLGLQIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
130 140 150 160 170 180
150 160 170
pF1KB6 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
::::::::::::::::::::::::::::::::::
XP_011 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
190 200 210
>>XP_016859722 (OMIM: 608680) PREDICTED: EKC/KEOPS compl (214 aa)
initn: 1078 init1: 784 opt: 784 Z-score: 1049.2 bits: 200.9 E(85289): 1.1e-51
Smith-Waterman score: 958; 81.2% identity (81.2% similar) in 207 aa overlap (8-175:8-214)
10 20 30 40
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTV-------------
::::::::::::::::::::::::::::::::::::::::
XP_016 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVFHSCCPGWSAMAR
10 20 30 40 50 60
50 60 70 80
pF1KB6 --------------------------IVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
::::::::::::::::::::::::::::::::::
XP_016 SWLTATSASRVQAIVLPQPPELLGLQIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
130 140 150 160 170 180
150 160 170
pF1KB6 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
::::::::::::::::::::::::::::::::::
XP_016 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
190 200 210
>>NP_001317316 (OMIM: 608680) EKC/KEOPS complex subunit (214 aa)
initn: 1078 init1: 784 opt: 784 Z-score: 1049.2 bits: 200.9 E(85289): 1.1e-51
Smith-Waterman score: 958; 81.2% identity (81.2% similar) in 207 aa overlap (8-175:8-214)
10 20 30 40
pF1KB6 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTV-------------
::::::::::::::::::::::::::::::::::::::::
NP_001 MQLTHQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVFHSCCPGWSAMAR
10 20 30 40 50 60
50 60 70 80
pF1KB6 --------------------------IVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
::::::::::::::::::::::::::::::::::
NP_001 SWLTATSASRVQAIVLPQPPELLGLQIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIF
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVSLKNLPEIMN
130 140 150 160 170 180
150 160 170
pF1KB6 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
::::::::::::::::::::::::::::::::::
NP_001 ITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL
190 200 210
175 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:40:01 2016 done: Sat Nov 5 20:40:02 2016
Total Scan time: 5.190 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]