FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6962, 240 aa
  1>>>pF1KB6962 240 - 240 aa - 240 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0622+/-0.000649; mu= 14.1302+/- 0.039
 mean_var=142.2972+/-27.516, 0's: 0 Z-trim(117.0): 28  B-trim: 56 in 1/52
 Lambda= 0.107517
 statistics sampled from 17673 (17701) to 17673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.544), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS8846.1 IGFBP6 gene_id:3489|Hs108|chr12         ( 240) 1743 280.5 6.6e-76


>>CCDS8846.1 IGFBP6 gene_id:3489|Hs108|chr12              (240 aa)
 initn: 1743 init1: 1743 opt: 1743  Z-score: 1476.2  bits: 280.5 E(32554): 6.6e-76
Smith-Waterman score: 1743; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KB6 MTPHRLLPPLLLLLALLLAASPGGALARCPGCGQGVQAGCPGGCVEEEDGGSPAEGCAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MTPHRLLPPLLLLLALLLAASPGGALARCPGCGQGVQAGCPGGCVEEEDGGSPAEGCAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EGCLRREGQECGVYTPNCAPGLQCHPPKDDEAPLRALLLGRGRCLPARAPAVAEENPKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 EGCLRREGQECGVYTPNCAPGLQCHPPKDDEAPLRALLLGRGRCLPARAPAVAEENPKES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KPQAGTARPQDVNRRDQQRNPGTSTTPSQPNSAGVQDTEMGPCRRHLDSVLQQLQTEVYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KPQAGTARPQDVNRRDQQRNPGTSTTPSQPNSAGVQDTEMGPCRRHLDSVLQQLQTEVYR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 GAQTLYVPNCDHRGFYRKRQCRSSQGQRRGPCWCVDRMGKSLPGSPDGNGSSSCPTGSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GAQTLYVPNCDHRGFYRKRQCRSSQGQRRGPCWCVDRMGKSLPGSPDGNGSSSCPTGSSG
              190       200       210       220       230       240




240 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:34:06 2016 done: Sat Nov  5 14:34:06 2016
 Total Scan time:  2.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]