Result of FASTA (omim) for
pF1KB6963
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6963, 214 aa
1>>>pF1KB6963 214 - 214 aa - 214 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7256+/-0.000518; mu= -3.0523+/- 0.031
mean_var=519.0368+/-113.288, 0's: 0 Z-trim(118.2): 42 B-trim: 446 in 2/56
Lambda= 0.056296
statistics sampled from 30846 (30889) to 30846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.362), width: 16
Scan time: 4.590
The best scores are: opt bits E(85289)
NP_036515 (OMIM: 610180) osteoclast-stimulating fa ( 214) 1443 131.4 1.1e-30
XP_006717116 (OMIM: 610180) PREDICTED: osteoclast- ( 217) 1427 130.1 2.7e-30
XP_011516826 (OMIM: 610180) PREDICTED: osteoclast- ( 188) 1253 115.9 4.4e-26
XP_006717118 (OMIM: 610180) PREDICTED: osteoclast- ( 171) 1144 107.0 2e-23
XP_016870111 (OMIM: 610180) PREDICTED: osteoclast- ( 181) 1132 106.0 4e-23
XP_011516827 (OMIM: 610180) PREDICTED: osteoclast- ( 184) 1116 104.8 9.8e-23
>>NP_036515 (OMIM: 610180) osteoclast-stimulating factor (214 aa)
initn: 1443 init1: 1443 opt: 1443 Z-score: 672.1 bits: 131.4 E(85289): 1.1e-30
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KB6 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA
130 140 150 160 170 180
190 200 210
pF1KB6 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
::::::::::::::::::::::::::::::::::
NP_036 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
190 200 210
>>XP_006717116 (OMIM: 610180) PREDICTED: osteoclast-stim (217 aa)
initn: 1376 init1: 1376 opt: 1427 Z-score: 665.0 bits: 130.1 E(85289): 2.7e-30
Smith-Waterman score: 1427; 98.6% identity (98.6% similar) in 217 aa overlap (1-214:1-217)
10 20 30 40 50
pF1KB6 MSKPPPKPVKPG---QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGR
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSKPPPKPVKPGEGGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF
130 140 150 160 170 180
180 190 200 210
pF1KB6 DMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
:::::::::::::::::::::::::::::::::::::
XP_006 DMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
190 200 210
>>XP_011516826 (OMIM: 610180) PREDICTED: osteoclast-stim (188 aa)
initn: 1253 init1: 1253 opt: 1253 Z-score: 589.2 bits: 115.9 E(85289): 4.4e-26
Smith-Waterman score: 1253; 100.0% identity (100.0% similar) in 187 aa overlap (28-214:2-188)
10 20 30 40 50 60
pF1KB6 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
:::::::::::::::::::::::::::::::::
XP_011 MPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
10 20 30
70 80 90 100 110 120
pF1KB6 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA
100 110 120 130 140 150
190 200 210
pF1KB6 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
::::::::::::::::::::::::::::::::::
XP_011 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
160 170 180
>>XP_006717118 (OMIM: 610180) PREDICTED: osteoclast-stim (171 aa)
initn: 1144 init1: 1144 opt: 1144 Z-score: 541.7 bits: 107.0 E(85289): 2e-23
Smith-Waterman score: 1144; 100.0% identity (100.0% similar) in 171 aa overlap (44-214:1-171)
20 30 40 50 60 70
pF1KB6 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI
::::::::::::::::::::::::::::::
XP_006 MSDTNWWKGTSKGRTGLIPSNYVAEQAESI
10 20 30
80 90 100 110 120 130
pF1KB6 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ
100 110 120 130 140 150
200 210
pF1KB6 GTDAVRTLSNAEDYLDDEDSD
:::::::::::::::::::::
XP_006 GTDAVRTLSNAEDYLDDEDSD
160 170
>>XP_016870111 (OMIM: 610180) PREDICTED: osteoclast-stim (181 aa)
initn: 1176 init1: 1119 opt: 1132 Z-score: 536.2 bits: 106.0 E(85289): 4e-23
Smith-Waterman score: 1161; 84.6% identity (84.6% similar) in 214 aa overlap (1-214:1-181)
10 20 30 40 50 60
pF1KB6 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA
::::::::::::::::::::::::::::::::::::::::::
XP_016 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK------------------
130 140 150 160
190 200 210
pF1KB6 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
:::::::::::::::::::
XP_016 ---------------DAVRTLSNAEDYLDDEDSD
170 180
>>XP_011516827 (OMIM: 610180) PREDICTED: osteoclast-stim (184 aa)
initn: 1183 init1: 1045 opt: 1116 Z-score: 529.1 bits: 104.8 E(85289): 9.8e-23
Smith-Waterman score: 1145; 83.4% identity (83.4% similar) in 217 aa overlap (1-214:1-184)
10 20 30 40 50
pF1KB6 MSKPPPKPVKPG---QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGR
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKPPPKPVKPGEGGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK---------------
130 140 150 160
180 190 200 210
pF1KB6 DMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
:::::::::::::::::::
XP_011 ------------------DAVRTLSNAEDYLDDEDSD
170 180
214 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:15:29 2016 done: Fri Nov 4 11:15:30 2016
Total Scan time: 4.590 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]