FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6964, 241 aa
  1>>>pF1KB6964 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0243+/-0.00087; mu= 15.3678+/- 0.052
 mean_var=55.8474+/-11.393, 0's: 0 Z-trim(104.7): 28  B-trim: 0 in 0/49
 Lambda= 0.171622
 statistics sampled from 8024 (8042) to 8024 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.247), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS34577.1 PSMB1 gene_id:5689|Hs108|chr6          ( 241) 1577 398.5 2.1e-111
CCDS11328.1 PSMB3 gene_id:5691|Hs108|chr17         ( 205)  287 79.1 2.5e-15


>>CCDS34577.1 PSMB1 gene_id:5689|Hs108|chr6               (241 aa)
 initn: 1577 init1: 1577 opt: 1577  Z-score: 2113.7  bits: 398.5 E(32554): 2.1e-111
Smith-Waterman score: 1577; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB6 MLSSTAMYSAPGRDLGMEPHRAAGPLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLSSTAMYSAPGRDLGMEPHRAAGPLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 STILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRK
              190       200       210       220       230       240

        
pF1KB6 D
       :
CCDS34 D
        

>>CCDS11328.1 PSMB3 gene_id:5691|Hs108|chr17              (205 aa)
 initn: 224 init1: 224 opt: 287  Z-score: 388.6  bits: 79.1 E(32554): 2.5e-15
Smith-Waterman score: 287; 25.8% identity (64.1% similar) in 209 aa overlap (35-241:6-205)

           10        20        30        40        50        60    
pF1KB6 TAMYSAPGRDLGMEPHRAAGPLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIH
                                     .:::...:. :.. . .:.: :..   .. 
CCDS11                          MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMV
                                        10        20        30     

           70        80        90       100       110       120    
pF1KB6 TRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL
       : :  : . . :.  :: .:.  :  :... .. ::..:. .... .   .. .:....:
CCDS11 TTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL
          40        50        60        70        80        90     

          130       140        150        160       170       180  
pF1KB6 YSRRFFPYYVYNIIGGLDEEG-KGAVYSFDPVGSYQ-RDSFKAGGSASAMLQPLLDNQVG
       : .:: :::.  .:.::: .  :  . :.: .:  .  :.: ..:. . ..  . .. . 
CCDS11 YEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCES-LW
         100       110       120       130       140       150     

            190       200       210       220       230       240 
pF1KB6 FKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD
         :: . .:.  ....::       ..:..::. .: .. . :. :. :  .:.. : :
CCDS11 EPNM-DPDHLFETISQAM-------LNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD
           160       170              180       190       200     




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:16:05 2016 done: Fri Nov  4 11:16:06 2016
 Total Scan time:  1.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]