FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6967, 215 aa
  1>>>pF1KB6967 215 - 215 aa - 215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9584+/-0.000642; mu= 7.2048+/- 0.039
 mean_var=109.0346+/-21.927, 0's: 0 Z-trim(114.5): 8  B-trim: 629 in 1/51
 Lambda= 0.122827
 statistics sampled from 15106 (15113) to 15106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.464), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS13616.1 TCP10L gene_id:140290|Hs108|chr21      ( 215) 1451 266.7 8.1e-72
CCDS47514.1 TCP10L2 gene_id:401285|Hs108|chr6      ( 353) 1103 205.1 4.5e-53
CCDS43527.1 TCP10 gene_id:6953|Hs108|chr6          ( 326)  916 171.9   4e-43


>>CCDS13616.1 TCP10L gene_id:140290|Hs108|chr21           (215 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1402.9  bits: 266.7 E(32554): 8.1e-72
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
              130       140       150       160       170       180

              190       200       210     
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
       :::::::::::::::::::::::::::::::::::
CCDS13 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
              190       200       210     

>>CCDS47514.1 TCP10L2 gene_id:401285|Hs108|chr6           (353 aa)
 initn: 1103 init1: 1103 opt: 1103  Z-score: 1066.3  bits: 205.1 E(32554): 4.5e-53
Smith-Waterman score: 1103; 78.3% identity (88.7% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
       :: ::::::.::::::::::::::::.:::: .::::  :: :.:::: :::::  ::::
CCDS47 MLEGQLEAREPKEGTHPEDPCPGAGAAMEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
       ::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
CCDS47 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
       :::::::::::::::::: :::::.:.::::::::: :::. ::::::::: :::.: ::
CCDS47 ALEPAFGKISPLSADEETTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
              130       140       150       160       170       180

              190       200       210                              
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV                         
       ::::.:.:.   :::::  .::::::: ::::                            
CCDS47 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERREVSEDGKIMHPSSRSLQNSGGRKSPVQA
              190       200       210       220       230       240

CCDS47 SQAATLQEQTAAAGVADRSSSVLGSSEGGFLSRVQAEEFASSSPDSAERQNLPVNPPSSL
              250       260       270       280       290       300

>>CCDS43527.1 TCP10 gene_id:6953|Hs108|chr6               (326 aa)
 initn: 916 init1: 916 opt: 916  Z-score: 887.7  bits: 171.9 E(32554): 4e-43
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)

               10        20        30        40        50        60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
                                  :::: .::::  :: :.:::: :::::  ::::
CCDS43                            MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
                                          10        20        30   

               70        80        90       100       110       120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
       ::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
CCDS43 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
       :::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
CCDS43 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
           100       110       120       130       140       150   

              190       200       210                              
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV                         
       ::::.:.:.   :::::  .::::::: :::::                           
CCDS43 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQA
           160       170       180       190       200       210   

CCDS43 SQATTLQEQTAAARGADRSSSVLGSSEGGFLSRVQADEFASSAPDSAERQNLPVNPPSSL
           220       230       240       250       260       270   




215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:10:04 2016 done: Fri Nov  4 11:10:04 2016
 Total Scan time:  2.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]