FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6974, 243 aa 1>>>pF1KB6974 243 - 243 aa - 243 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0229+/-0.000863; mu= 7.9725+/- 0.052 mean_var=122.1993+/-24.064, 0's: 0 Z-trim(110.6): 17 B-trim: 120 in 1/50 Lambda= 0.116022 statistics sampled from 11753 (11764) to 11753 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.361), width: 16 Scan time: 2.500 The best scores are: opt bits E(32554) CCDS34520.1 RWDD1 gene_id:51389|Hs108|chr6 ( 243) 1554 270.5 7.3e-73 CCDS43496.1 RWDD1 gene_id:51389|Hs108|chr6 ( 147) 949 169.1 1.5e-42 >>CCDS34520.1 RWDD1 gene_id:51389|Hs108|chr6 (243 aa) initn: 1554 init1: 1554 opt: 1554 Z-score: 1421.6 bits: 270.5 E(32554): 7.3e-73 Smith-Waterman score: 1554; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243) 10 20 30 40 50 60 pF1KB6 MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 RREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 LSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESD 190 200 210 220 230 240 pF1KB6 SAD ::: CCDS34 SAD >>CCDS43496.1 RWDD1 gene_id:51389|Hs108|chr6 (147 aa) initn: 949 init1: 949 opt: 949 Z-score: 877.5 bits: 169.1 E(32554): 1.5e-42 Smith-Waterman score: 949; 100.0% identity (100.0% similar) in 147 aa overlap (97-243:1-147) 70 80 90 100 110 120 pF1KB6 YEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEK :::::::::::::::::::::::::::::: CCDS43 MVMIFTLVTAVQEKLNEIVDQIKTRREEEK 10 20 30 130 140 150 160 170 180 pF1KB6 KQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQL 40 50 60 70 80 90 190 200 210 220 230 240 pF1KB6 FETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDSAD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 FETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDSAD 100 110 120 130 140 243 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 14:35:48 2016 done: Sat Nov 5 14:35:49 2016 Total Scan time: 2.500 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]