Result of FASTA (ccds) for
pF1KB6982
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6982, 246 aa
1>>>pF1KB6982 246 - 246 aa - 246 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2355+/-0.000948; mu= 14.1382+/- 0.056
mean_var=57.1438+/-11.325, 0's: 0 Z-trim(103.5): 27 B-trim: 0 in 0/49
Lambda= 0.169664
statistics sampled from 7436 (7461) to 7436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.229), width: 16
Scan time: 1.580
The best scores are: opt bits E(32554)
CCDS9655.1 PSMA6 gene_id:5687|Hs108|chr14 ( 246) 1619 404.6 3.1e-113
CCDS61437.1 PSMA6 gene_id:5687|Hs108|chr14 ( 227) 1452 363.7 5.9e-101
CCDS61438.1 PSMA6 gene_id:5687|Hs108|chr14 ( 167) 1108 279.5 9.9e-76
CCDS5467.1 PSMA2 gene_id:5683|Hs108|chr7 ( 234) 465 122.1 3.2e-28
CCDS10303.1 PSMA4 gene_id:5685|Hs108|chr15 ( 261) 442 116.5 1.7e-26
CCDS13489.1 PSMA7 gene_id:5688|Hs108|chr20 ( 248) 439 115.8 2.8e-26
CCDS45842.1 PSMA8 gene_id:143471|Hs108|chr18 ( 250) 413 109.4 2.3e-24
CCDS799.1 PSMA5 gene_id:5686|Hs108|chr1 ( 241) 403 107.0 1.2e-23
CCDS32808.1 PSMA8 gene_id:143471|Hs108|chr18 ( 256) 398 105.8 3e-23
CCDS9731.1 PSMA3 gene_id:5684|Hs108|chr14 ( 255) 391 104.0 9.8e-23
CCDS45113.1 PSMA3 gene_id:5684|Hs108|chr14 ( 248) 369 98.7 4e-21
CCDS7816.1 PSMA1 gene_id:5682|Hs108|chr11 ( 263) 363 97.2 1.2e-20
CCDS31431.1 PSMA1 gene_id:5682|Hs108|chr11 ( 269) 363 97.2 1.2e-20
CCDS77169.1 PSMA8 gene_id:143471|Hs108|chr18 ( 224) 299 81.5 5.2e-16
CCDS45319.1 PSMA4 gene_id:5685|Hs108|chr15 ( 190) 281 77.1 9.6e-15
CCDS55619.1 PSMA5 gene_id:5686|Hs108|chr1 ( 183) 263 72.7 2e-13
CCDS45843.1 PSMA8 gene_id:143471|Hs108|chr18 ( 212) 241 67.3 9.4e-12
>>CCDS9655.1 PSMA6 gene_id:5687|Hs108|chr14 (246 aa)
initn: 1619 init1: 1619 opt: 1619 Z-score: 2146.4 bits: 404.6 E(32554): 3.1e-113
Smith-Waterman score: 1619; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
190 200 210 220 230 240
pF1KB6 ALAERD
::::::
CCDS96 ALAERD
>>CCDS61437.1 PSMA6 gene_id:5687|Hs108|chr14 (227 aa)
initn: 1452 init1: 1452 opt: 1452 Z-score: 1926.0 bits: 363.7 E(32554): 5.9e-101
Smith-Waterman score: 1452; 100.0% identity (100.0% similar) in 221 aa overlap (26-246:7-227)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
:::::::::::::::::::::::::::::::::::
CCDS61 MAGLRREYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
10 20 30 40
70 80 90 100 110 120
pF1KB6 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
170 180 190 200 210 220
pF1KB6 ALAERD
::::::
CCDS61 ALAERD
>>CCDS61438.1 PSMA6 gene_id:5687|Hs108|chr14 (167 aa)
initn: 1108 init1: 1108 opt: 1108 Z-score: 1473.1 bits: 279.5 E(32554): 9.9e-76
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 167 aa overlap (80-246:1-167)
50 60 70 80 90 100
pF1KB6 IVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEI
::::::::::::::::::::::::::::::
CCDS61 MTGMTADSRSQVQRARYEAANWKYKYGYEI
10 20 30
110 120 130 140 150 160
pF1KB6 PVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAG
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB6 VKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 VKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRI
100 110 120 130 140 150
230 240
pF1KB6 LTEAEIDAHLVALAERD
:::::::::::::::::
CCDS61 LTEAEIDAHLVALAERD
160
>>CCDS5467.1 PSMA2 gene_id:5683|Hs108|chr7 (234 aa)
initn: 423 init1: 235 opt: 465 Z-score: 620.1 bits: 122.1 E(32554): 3.2e-28
Smith-Waterman score: 465; 35.6% identity (67.4% similar) in 236 aa overlap (8-243:5-234)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
:.. .: ::: :.: :.:::. :. :: ::.... . .:..:.:: . :
CCDS54 MAERGYSFSLTTFSPSGKLVQIEYALAAVA-GGAPSVGIKAANGVVLATEKKQKSIL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
: .: .. ::..:: :..:: : : :.::: : .. : ::. .: .:.:.
CCDS54 YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVAS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
. : :::.. .::.: ... : .: . : ... ::.: : ..:::: : . ... .:::
CCDS54 VMQEYTQSGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
:. .. : .:....::: :. . .. ..::::. .. :: :: .:. .:.
CCDS54 KRYNE--DLELEDAIHTAILTLKESFEGQMTEDNIEVGIC--NEAGFRRLTPTEVKDYLA
180 190 200 210 220 230
pF1KB6 ALAERD
:.:
CCDS54 AIA
>>CCDS10303.1 PSMA4 gene_id:5685|Hs108|chr15 (261 aa)
initn: 360 init1: 360 opt: 442 Z-score: 589.0 bits: 116.5 E(32554): 1.7e-26
Smith-Waterman score: 442; 32.8% identity (70.7% similar) in 232 aa overlap (9-236:5-234)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
.: . :::::::::::::::..::...: : ... ..: ........ ::
CCDS10 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKL
10 20 30 40 50
70 80 90 100 110
pF1KB6 LDSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIA
:: .. ..:..:...: ..:.:.:. ... : : . .: :: ..: .
CCDS10 LDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 DISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFL
::.:.::: . ::.: .. :: :.. : :.:. ::.: : :.::: : ... ..:.:
CCDS10 DIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 EKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID
.. :. . :..... :: :. ..... .. ..:....: :: : .:.: . :..
CCDS10 KQDYKEG-EMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE
180 190 200 210 220 230
240
pF1KB6 AHLVALAERD
CCDS10 QLIKKHEEEEAKAEREKKEKEQKEKDK
240 250 260
>>CCDS13489.1 PSMA7 gene_id:5688|Hs108|chr20 (248 aa)
initn: 308 init1: 308 opt: 439 Z-score: 585.3 bits: 115.8 E(32554): 2.8e-26
Smith-Waterman score: 439; 34.5% identity (66.0% similar) in 238 aa overlap (9-246:3-235)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
.:: ::.:::.:.:.::::: .:...:. :.:.:::.: .:. ..:: ::
CCDS13 MSYDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGRDIVVLGVEKKSVAKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
: :: .. . .:. ...:.:::.: ..::: : . . . :... . ::.
CCDS13 QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIAS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
..: :::. ::.: ...:.: . :..:. ::.: : ..::.: : :::
CCDS13 LKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
:. . : . :.. .: : :.. : .::..:. .. ...::. ::. . :
CCDS13 KNYTDEAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMR-RDQSLKILNPEEIEKY-V
180 190 200 210 220
pF1KB6 ALAERD
: :..
CCDS13 AEIEKEKEENEKKKQKKAS
230 240
>>CCDS45842.1 PSMA8 gene_id:143471|Hs108|chr18 (250 aa)
initn: 388 init1: 286 opt: 413 Z-score: 550.9 bits: 109.4 E(32554): 2.3e-24
Smith-Waterman score: 413; 30.8% identity (65.8% similar) in 234 aa overlap (9-242:5-234)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
.:: ::.:::.:.:.::::: .:...:. :.:..:: . .:. ..:: ::
CCDS45 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
: :: .. . ... ...:.:::.: ..::: : . : . :... . ::
CCDS45 QDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIAT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
..: :::. ::.: ...:.:.. ..:. ::.: : ..::.: : . :::
CCDS45 LKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
:. . . .... :: : :.. : .::.... ..: ..... :.. ...
CCDS45 KNYTEDAIASDSEAIKLAIKALLEVVQSGGK--NIELAIIRRNQP-LKMFSAKEVELYVT
180 190 200 210 220 230
pF1KB6 ALAERD
.
CCDS45 EIEKEKEEAEKKKSKKSV
240 250
>>CCDS799.1 PSMA5 gene_id:5686|Hs108|chr1 (241 aa)
initn: 281 init1: 121 opt: 403 Z-score: 537.9 bits: 107.0 E(32554): 1.2e-23
Smith-Waterman score: 403; 27.5% identity (70.0% similar) in 233 aa overlap (9-236:8-235)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
.:: .. :::::::.:::::..::. :. :..... .. . ....:.. . :
CCDS79 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGIQTSEGVCLAVEKRITSPL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
.. :.. .. .: .:::.:.:. ::... ...:: :. : . :. . :. . . ...
CCDS79 MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSN
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 IS-QVYTQNAE----MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTES
.. : ..:. ::.: ... :.:: .:::... ::.: . : : : . .
CCDS79 LALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 TSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEI
: :.. .:.. :......... :. :. .. ..::...: . .:...:. :.
CCDS79 QSSLQEVYHKSM--TLKEAIKSSLIILKQVMEEKLNATNIELATVQ-PGQNFHMFTKEEL
180 190 200 210 220 230
240
pF1KB6 DAHLVALAERD
.
CCDS79 EEVIKDI
240
>>CCDS32808.1 PSMA8 gene_id:143471|Hs108|chr18 (256 aa)
initn: 362 init1: 219 opt: 398 Z-score: 530.9 bits: 105.8 E(32554): 3e-23
Smith-Waterman score: 398; 31.1% identity (64.3% similar) in 241 aa overlap (9-242:5-240)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
.:: ::.:::.:.:.::::: .:...:. :.:..:: . .:. ..:: ::
CCDS32 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKL
10 20 30 40 50
70 80 90 100 110
pF1KB6 LDSSTVTHLFKITENIGC----VMT---GMTADSRSQVQRARYEAANWKYKYGYEIPVDM
: :: .. . ... : :.: :.:::.: ..::: : . : . :..
CCDS32 QDERTVRKICALDDHV-CMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQT
. . :: ..: :::. ::.: ...:.:.. ..:. ::.: : ..::.: : .
CCDS32 ITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 ESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEA
::::. . . .... :: : :.. : .::.... ..: .....
CCDS32 TVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGK--NIELAIIRRNQP-LKMFSAK
180 190 200 210 220 230
240
pF1KB6 EIDAHLVALAERD
:.. ... .
CCDS32 EVELYVTEIEKEKEEAEKKKSKKSV
240 250
>>CCDS9731.1 PSMA3 gene_id:5684|Hs108|chr14 (255 aa)
initn: 373 init1: 296 opt: 391 Z-score: 521.6 bits: 104.0 E(32554): 9.8e-23
Smith-Waterman score: 391; 35.1% identity (71.3% similar) in 174 aa overlap (8-181:7-179)
10 20 30 40 50 60
pF1KB6 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL
:.: . :::.::..:::::.::..... :....: :: .:. ..: : .::
CCDS97 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD
. .. .::.. ...: ...:. ::.:: .. :: ::.:.. ..::.::. : :.:
CCDS97 YEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE
..:: . .::.:: ..: . . ..: :.: ::.: :. . : : . . . .:
CCDS97 YVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 KKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV
:
CCDS97 KLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEK
180 190 200 210 220 230
246 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:44:17 2016 done: Fri Nov 4 10:44:18 2016
Total Scan time: 1.580 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]