Result of FASTA (omim) for
pF1KB6987
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6987, 219 aa
1>>>pF1KB6987 219 - 219 aa - 219 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8507+/-0.000364; mu= 4.3243+/- 0.023
mean_var=215.3120+/-46.955, 0's: 0 Z-trim(120.9): 31 B-trim: 3868 in 2/58
Lambda= 0.087406
statistics sampled from 36721 (36793) to 36721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.431), width: 16
Scan time: 7.290
The best scores are: opt bits E(85289)
NP_001008712 (OMIM: 601558) RNA-binding protein wi ( 219) 1482 198.6 6.7e-51
XP_016868471 (OMIM: 601558) PREDICTED: RNA-binding ( 245) 1197 162.7 4.8e-40
XP_016868470 (OMIM: 601558) PREDICTED: RNA-binding ( 246) 1197 162.7 4.8e-40
XP_016868469 (OMIM: 601558) PREDICTED: RNA-binding ( 264) 1197 162.7 5e-40
NP_001008711 (OMIM: 601558) RNA-binding protein wi ( 204) 1183 160.9 1.4e-39
XP_016868478 (OMIM: 601558) PREDICTED: RNA-binding ( 176) 1171 159.3 3.7e-39
XP_016868477 (OMIM: 601558) PREDICTED: RNA-binding ( 179) 1171 159.3 3.8e-39
XP_016868475 (OMIM: 601558) PREDICTED: RNA-binding ( 196) 1171 159.3 4e-39
NP_006858 (OMIM: 601558) RNA-binding protein with ( 196) 1171 159.3 4e-39
NP_001008710 (OMIM: 601558) RNA-binding protein wi ( 196) 1171 159.3 4e-39
XP_016868473 (OMIM: 601558) PREDICTED: RNA-binding ( 224) 1171 159.4 4.4e-39
XP_016868472 (OMIM: 601558) PREDICTED: RNA-binding ( 245) 1056 144.9 1.1e-34
XP_016868476 (OMIM: 601558) PREDICTED: RNA-binding ( 186) 904 125.6 5.3e-29
XP_016868479 (OMIM: 601558) PREDICTED: RNA-binding ( 162) 876 122.0 5.5e-28
XP_016868481 (OMIM: 601558) PREDICTED: RNA-binding ( 136) 861 120.1 1.8e-27
XP_016868474 (OMIM: 601558) PREDICTED: RNA-binding ( 202) 676 96.9 2.5e-20
XP_016868480 (OMIM: 601558) PREDICTED: RNA-binding ( 160) 530 78.4 7.5e-15
>>NP_001008712 (OMIM: 601558) RNA-binding protein with m (219 aa)
initn: 1482 init1: 1482 opt: 1482 Z-score: 1034.8 bits: 198.6 E(85289): 6.7e-51
Smith-Waterman score: 1482; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
:::::::::::::::::::::::::::::::::::::::
NP_001 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
190 200 210
>>XP_016868471 (OMIM: 601558) PREDICTED: RNA-binding pro (245 aa)
initn: 1182 init1: 1182 opt: 1197 Z-score: 839.9 bits: 162.7 E(85289): 4.8e-40
Smith-Waterman score: 1197; 94.8% identity (95.8% similar) in 191 aa overlap (1-191:1-189)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_016 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQVSSP
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
: ..::
XP_016 --PPAMGALCPRPVLSHLSQEGSSNSALCLVSKWIQMHQAMSRGCAGSLPPRLLLRAGSP
190 200 210 220 230
>>XP_016868470 (OMIM: 601558) PREDICTED: RNA-binding pro (246 aa)
initn: 1182 init1: 1182 opt: 1197 Z-score: 839.9 bits: 162.7 E(85289): 4.8e-40
Smith-Waterman score: 1197; 94.8% identity (95.8% similar) in 191 aa overlap (1-191:1-189)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_016 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQVSSP
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
: ..::
XP_016 --PPAMGALCPRPVLSHLSQEGSSNSALCLVSKWIQMHQAMSRGCAGSLPPRLLLRAGSP
190 200 210 220 230
>>XP_016868469 (OMIM: 601558) PREDICTED: RNA-binding pro (264 aa)
initn: 1182 init1: 1182 opt: 1197 Z-score: 839.5 bits: 162.7 E(85289): 5e-40
Smith-Waterman score: 1197; 94.8% identity (95.8% similar) in 191 aa overlap (1-191:1-189)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_016 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQVSSP
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
: ..::
XP_016 --PPAMGALCPRPVLSHLSQEGSSNSALCLVSKWIQMHQAMSRGCAGSLPPRLLLRAGSP
190 200 210 220 230
>>NP_001008711 (OMIM: 601558) RNA-binding protein with m (204 aa)
initn: 1171 init1: 1171 opt: 1183 Z-score: 831.4 bits: 160.9 E(85289): 1.4e-39
Smith-Waterman score: 1183; 93.2% identity (95.8% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQ-CFS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: : .
NP_001 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQLCEG
130 140 150 160 170 180
180 190 200 210
pF1KB6 PEAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
.. . :. :
NP_001 QTVRRSHPLSAPSPDSASLAWFPV
190 200
>>XP_016868478 (OMIM: 601558) PREDICTED: RNA-binding pro (176 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 824.0 bits: 159.3 E(85289): 3.7e-39
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQ
130 140 150 160 170
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
>>XP_016868477 (OMIM: 601558) PREDICTED: RNA-binding pro (179 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 823.9 bits: 159.3 E(85289): 3.8e-39
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQETL
130 140 150 160 170
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
>>XP_016868475 (OMIM: 601558) PREDICTED: RNA-binding pro (196 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 823.4 bits: 159.3 E(85289): 4e-39
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWL
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
XP_016 PPSEATSQGWKSRQFC
190
>>NP_006858 (OMIM: 601558) RNA-binding protein with mult (196 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 823.4 bits: 159.3 E(85289): 4e-39
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWL
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
NP_006 PPSEATSQGWKSRQFC
190
>>NP_001008710 (OMIM: 601558) RNA-binding protein with m (196 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 823.4 bits: 159.3 E(85289): 4e-39
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWL
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
NP_001 PPSEATSQGWKSRQFC
190
219 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:36:51 2016 done: Sat Nov 5 14:36:52 2016
Total Scan time: 7.290 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]