Result of FASTA (ccds) for
pF1KB6988
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6988, 248 aa
1>>>pF1KB6988 248 - 248 aa - 248 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7178+/-0.000848; mu= 7.4589+/- 0.052
mean_var=220.4508+/-43.544, 0's: 0 Z-trim(115.4): 150 B-trim: 7 in 1/53
Lambda= 0.086381
statistics sampled from 15782 (15942) to 15782 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.49), width: 16
Scan time: 2.670
The best scores are: opt bits E(32554)
CCDS7247.1 MBL2 gene_id:4153|Hs108|chr10 ( 248) 1697 223.0 1.5e-58
CCDS7362.1 SFTPD gene_id:6441|Hs108|chr10 ( 375) 562 81.8 7.3e-16
CCDS44445.1 SFTPA1 gene_id:653509|Hs108|chr10 ( 248) 518 76.1 2.5e-14
CCDS44444.2 SFTPA1 gene_id:653509|Hs108|chr10 ( 263) 518 76.1 2.6e-14
CCDS41540.1 SFTPA2 gene_id:729238|Hs108|chr10 ( 248) 513 75.5 3.8e-14
>>CCDS7247.1 MBL2 gene_id:4153|Hs108|chr10 (248 aa)
initn: 1697 init1: 1697 opt: 1697 Z-score: 1164.8 bits: 223.0 E(32554): 1.5e-58
Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB6 MSLFPSLPLLLLSMVAASYSETVTCEDAQKTCPAVIACSSPGINGFPGKDGRDGTKGEKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSLFPSLPLLLLSMVAASYSETVTCEDAQKTCPAVIACSSPGINGFPGKDGRDGTKGEKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EPGQGLRGLQGPPGKLGPPGNPGPSGSPGPKGQKGDPGKSPDGDSSLAASERKALQTEMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EPGQGLRGLQGPPGKLGPPGNPGPSGSPGPKGQKGDPGKSPDGDSSLAASERKALQTEMA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RIKKWLTFSLGKQVGNKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RIKKWLTFSLGKQVGNKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSH
190 200 210 220 230 240
pF1KB6 LAVCEFPI
::::::::
CCDS72 LAVCEFPI
>>CCDS7362.1 SFTPD gene_id:6441|Hs108|chr10 (375 aa)
initn: 542 init1: 274 opt: 562 Z-score: 398.2 bits: 81.8 E(32554): 7.3e-16
Smith-Waterman score: 599; 43.6% identity (67.4% similar) in 227 aa overlap (40-246:149-375)
10 20 30 40 50 60
pF1KB6 LLLSMVAASYSETVTCEDAQKTCPAVIACSSPGINGFPGKDGRDGTKGEKGEPGQ----G
.::..: : : : :::.: ::. :
CCDS73 REGPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPG
120 130 140 150 160 170
70 80 90 100 110
pF1KB6 LRGLQGPPGKLGPPGNPGPSGSPGPKGQKGDPG-KSPDGDSSL--AASERKA--------
: : : .:: :.:: : :: ::.:: :: :. :.:.: .:: :.
CCDS73 NTGAAGSAGAMGPQGSPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQGQV
180 190 200 210 220 230
120 130 140 150 160 170
pF1KB6 --LQTEMARIKKWLTFSLGKQVGNKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENG
::. ... :: : :..::.:.: : : . : ... ::.. ...:.::.::::.
CCDS73 QHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENA
240 250 260 270 280 290
180 190 200 210 220
pF1KB6 AIQNLI---KEEAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNG
:.:.:. .: :::..:: ::::.:. ::. :.:.:: ::::. :..:::: .. ::
CCDS73 ALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDDGGSEDCVEIFTNG
300 310 320 330 340 350
230 240
pF1KB6 QWNDVPCSTSHLAVCEFPI
.::: :. ..:.::::
CCDS73 KWNDRACGEKRLVVCEF
360 370
>>CCDS44445.1 SFTPA1 gene_id:653509|Hs108|chr10 (248 aa)
initn: 479 init1: 179 opt: 518 Z-score: 370.8 bits: 76.1 E(32554): 2.5e-14
Smith-Waterman score: 535; 37.5% identity (62.2% similar) in 259 aa overlap (8-246:5-248)
10 20 30 40 50
pF1KB6 MSLFPSLPLLL-LSMVAASYSETVTCEDAQKTC---PAVIACSSPGINGFPGKDGRDGTK
:: : : ..::: ..:: .. .: :.. . .:: .:.::.::::: :
CCDS44 MWLCPLALNLILMAAS---GAVCE-VKDVCVGSPGIPG--TPGSHGLPGRDGRDGLK
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GEKGEPGQGLRGLQGPPGKLG-PPGN---PGPSGSPGPKGQKGDPG-KSPDGDSSLAASE
:. : :: .::::.. :::: :: : :: :.::.:: ..: : : :
CCDS44 GDPGPPGP-----MGPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPG---LPAHL
60 70 80 90 100
120 130 140 150 160
pF1KB6 RKALQTEMARIKKWLTFSLGK--------QVGNKFFLTNGEIMTFEKVKALCVKFQASVA
. ::. . ... . . : ::.: : .::. .::. .. :.. . .:
CCDS44 DEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIA
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB6 TPRNAAENGAIQNLIKEE---AFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDE
.::: :: :: ...:. :..:.:. . :.: :. ..:::: .::: . :. :
CCDS44 VPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGK-E
170 180 190 200 210 220
230 240
pF1KB6 DCVLLLKNGQWNDVPCSTSHLAVCEFPI
.:: . .::::: : :.:..:::
CCDS44 QCVEMYTDGQWNDRNCLYSRLTICEF
230 240
>>CCDS44444.2 SFTPA1 gene_id:653509|Hs108|chr10 (263 aa)
initn: 545 init1: 179 opt: 518 Z-score: 370.5 bits: 76.1 E(32554): 2.6e-14
Smith-Waterman score: 535; 37.5% identity (62.2% similar) in 259 aa overlap (8-246:20-263)
10 20 30 40
pF1KB6 MSLFPSLPLLL-LSMVAASYSETVTCEDAQKTC---PAVIACSSPGIN
:: : : ..::: ..:: .. .: :.. . .:: .
CCDS44 MRPCQVPGAATGPRAMWLCPLALNLILMAAS---GAVCE-VKDVCVGSPGIPG--TPGSH
10 20 30 40 50
50 60 70 80 90
pF1KB6 GFPGKDGRDGTKGEKGEPGQGLRGLQGPPGKLG-PPGN---PGPSGSPGPKGQKGDPG-K
:.::.::::: ::. : :: .::::.. :::: :: : :: :.::.:: .
CCDS44 GLPGRDGRDGLKGDPGPPGP-----MGPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGER
60 70 80 90 100
100 110 120 130 140 150
pF1KB6 SPDGDSSLAASERKALQTEMARIKKWLTFSLGK--------QVGNKFFLTNGEIMTFEKV
.: : : : . ::. . ... . . : ::.: : .::. .::. .
CCDS44 GPPG---LPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAI
110 120 130 140 150 160
160 170 180 190 200
pF1KB6 KALCVKFQASVATPRNAAENGAIQNLIKEE---AFLGITDEKTEGQFVDLTGNRLTYTNW
. :.. . .:.::: :: :: ...:. :..:.:. . :.: :. ..::::
CCDS44 QEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNW
170 180 190 200 210 220
210 220 230 240
pF1KB6 NEGEPNNAGSDEDCVLLLKNGQWNDVPCSTSHLAVCEFPI
.::: . :. :.:: . .::::: : :.:..:::
CCDS44 YRGEPAGRGK-EQCVEMYTDGQWNDRNCLYSRLTICEF
230 240 250 260
>>CCDS41540.1 SFTPA2 gene_id:729238|Hs108|chr10 (248 aa)
initn: 481 init1: 179 opt: 513 Z-score: 367.4 bits: 75.5 E(32554): 3.8e-14
Smith-Waterman score: 530; 35.7% identity (61.2% similar) in 255 aa overlap (8-246:5-248)
10 20 30 40 50 60
pF1KB6 MSLFPSLPLLLLSMVAASYSETVTCEDAQKTCPAVIACSSPGINGFPGKDGRDGTKGEKG
:: : .. :. . . .:. :.. . .:: .:.::.:::::.::. :
CCDS41 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPG--TPGSHGLPGRDGRDGVKGDPG
10 20 30 40 50
70 80 90 100 110
pF1KB6 EPGQGLRGLQGPPGKLG-PPGN---PGPSGSPGPKGQKGDPG-KSPDGDSSLAASERKAL
:: .::::. :::: :: : :: .:.::. : ..: : : : . :
CCDS41 PPGP-----MGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG---LPAHLDEEL
60 70 80 90 100
120 130 140 150 160
pF1KB6 QTEMARIKKWLTFSLGK--------QVGNKFFLTNGEIMTFEKVKALCVKFQASVATPRN
:. . ... . . : ::.: : .::. .::. .. :.. . .:.:::
CCDS41 QATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRN
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB6 AAENGAIQNLIKEE---AFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVL
:: :: ...:. :..:.:. . :.: :. ..:::: .::: . :. :.::
CCDS41 PEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGK-EQCVE
170 180 190 200 210 220
230 240
pF1KB6 LLKNGQWNDVPCSTSHLAVCEFPI
. .::::: : :.:..:::
CCDS41 MYTDGQWNDRNCLYSRLTICEF
230 240
248 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:46:12 2016 done: Sat Nov 5 17:46:12 2016
Total Scan time: 2.670 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]