Result of FASTA (ccds) for
pF1KB6989
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6989, 219 aa
1>>>pF1KB6989 219 - 219 aa - 219 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4003+/-0.000808; mu= 12.5915+/- 0.048
mean_var=60.5303+/-12.279, 0's: 0 Z-trim(106.6): 32 B-trim: 0 in 0/49
Lambda= 0.164850
statistics sampled from 9022 (9049) to 9022 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.278), width: 16
Scan time: 1.390
The best scores are: opt bits E(32554)
CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 ( 219) 1434 349.4 1.1e-96
CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 ( 239) 879 217.4 6.2e-57
CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 ( 213) 722 180.0 9.8e-46
CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 ( 272) 337 88.5 4.4e-18
CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 ( 276) 337 88.5 4.5e-18
CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 ( 273) 335 88.0 6.2e-18
CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 ( 277) 316 83.5 1.4e-16
CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 ( 263) 313 82.8 2.3e-16
CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 ( 300) 295 78.5 4.9e-15
>>CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 (219 aa)
initn: 1434 init1: 1434 opt: 1434 Z-score: 1849.5 bits: 349.4 E(32554): 1.1e-96
Smith-Waterman score: 1434; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KB6 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA
130 140 150 160 170 180
190 200 210
pF1KB6 LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
:::::::::::::::::::::::::::::::::::::::
CCDS47 LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
190 200 210
>>CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 (239 aa)
initn: 877 init1: 518 opt: 879 Z-score: 1135.6 bits: 217.4 E(32554): 6.2e-57
Smith-Waterman score: 879; 62.4% identity (89.1% similar) in 202 aa overlap (16-216:30-231)
10 20 30 40
pF1KB6 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAV
:: ::::::::.::::::.:.:::...: .
CCDS11 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 VNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNI
.::: :::.:.:.::.: ::::::.::::: ..::: .:.:::.::::: .::.. ...
CCDS11 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 SYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPG
:.::::: : ...:::: .::::::.. .:::..:: ::::::::..:::::::.:. :
CCDS11 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
130 140 150 160 170 180
170 180 190 200 210
pF1KB6 MSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
:. ::: .::..:.:::: ::::::::: :..:. .::...:.::...:::
CCDS11 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
190 200 210 220 230
>>CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 (213 aa)
initn: 717 init1: 518 opt: 722 Z-score: 934.6 bits: 180.0 E(32554): 9.8e-46
Smith-Waterman score: 722; 62.8% identity (88.4% similar) in 164 aa overlap (16-178:30-193)
10 20 30 40
pF1KB6 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAV
:: ::::::::.::::::.:.:::...: .
CCDS73 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 VNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNI
.::: :::.:.:.::.: ::::::.::::: ..::: .:.:::.::::: .::.. ...
CCDS73 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 SYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPG
:.::::: : ...:::: .::::::.. .:::..:: ::::::::..:::::::.:. :
CCDS73 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
130 140 150 160 170 180
170 180 190 200 210
pF1KB6 MSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
:. ::: .::..:
CCDS73 MTKEECLQFTANAFFFYPQLSLWPWSGMAPVEE
190 200 210
>>CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 (272 aa)
initn: 330 init1: 197 opt: 337 Z-score: 438.0 bits: 88.5 E(32554): 4.4e-18
Smith-Waterman score: 337; 33.8% identity (58.1% similar) in 198 aa overlap (9-202:55-251)
10 20 30
pF1KB6 MLRAGAPTGDLPRAGEVHT--GTTIMAVEFDGGVVMGS
:: : ... ::: .: .:. ::. .
CCDS47 AAPLDDTTLPTPVSSGCPGLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 DSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLV
:::.::: . .:. .. . ..:: ::: : . : . .:. .. : :
CCDS47 DSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISV
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 LAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFI
::.... :. .:: :: :. :::.. : : : :. . :. : ::.:.
CCDS47 SAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTG-SGNTYA
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 YGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELP
:: .:..:.:..:::: . ::: : ::. ::::. . . :
CCDS47 YGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDL
210 220 230 240 250 260
pF1KB6 KFYDE
CCDS47 LHQYREANQ
270
>>CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 (276 aa)
initn: 354 init1: 197 opt: 337 Z-score: 437.9 bits: 88.5 E(32554): 4.5e-18
Smith-Waterman score: 337; 33.8% identity (58.1% similar) in 198 aa overlap (9-202:59-255)
10 20 30
pF1KB6 MLRAGAPTGDLPRAGEVHT--GTTIMAVEFDGGVVMGS
:: : ... ::: .: .:. ::. .
CCDS47 DPGHYSFSMRSPELALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAV
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 DSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLV
:::.::: . .:. .. . ..:: ::: : . : . .:. .. : :
CCDS47 DSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISV
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 LAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIGGSGSTFI
::.... :. .:: :: :. :::.. : : : :. . :. : ::.:.
CCDS47 SAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTG-SGNTYA
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB6 YGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELP
:: .:..:.:..:::: . ::: : ::. ::::. . . :
CCDS47 YGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDL
210 220 230 240 250 260
pF1KB6 KFYDE
CCDS47 LHQYREANQ
270
>>CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 (273 aa)
initn: 306 init1: 306 opt: 335 Z-score: 435.4 bits: 88.0 E(32554): 6.2e-18
Smith-Waterman score: 335; 30.5% identity (64.5% similar) in 197 aa overlap (7-202:28-221)
10 20 30
pF1KB6 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSR
: .:.: . ::::: .. :. ::..:.:.:
CCDS10 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARK--TGTTIAGLVFQDGVILGADTR
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 VSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA
.. .:... .:. . .::: .: ::::. .. :.: ..:::.. . : : ..
CCDS10 ATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATV
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYV
. ..:. ..:. ..: :.:.: : : :.::. : .: ::. :::. . .
CCDS10 TRILRQTLFRYQGHVGASLIVGGVDLT-GPQLYGVHPHGSYSRLPFTALGSGQDAALAVL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 DAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYD
. ..:.:. : . . ..:.. .. : .::: . .:: .:
CCDS10 EDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKR
180 190 200 210 220 230
pF1KB6 E
CCDS10 SGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
240 250 260 270
>>CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 (277 aa)
initn: 326 init1: 302 opt: 316 Z-score: 410.9 bits: 83.5 E(32554): 1.4e-16
Smith-Waterman score: 316; 29.2% identity (64.6% similar) in 195 aa overlap (11-204:36-227)
10 20 30 40
pF1KB6 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRV
::.. . ::::: .: . :.:.:.:.:.
CCDS68 VYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRK--TGTTIAGVVYKDGIVLGADTRA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 SAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAA
. : .:... .:. . ::: .:.:::.. .... . .::::.. . : :..:
CCDS68 TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN
70 80 90 100 110 120
110 120 130 140 150
pF1KB6 NVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYVD
..... ..:. ..: :...: : : ..:. : . :.. :::: .. .
CCDS68 RMLKQMLFRYQGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 AAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
..: : :: . ....::: .. : .::. : : .:. .:
CCDS68 DKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRL
190 200 210 220 230 240
CCDS68 GRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
250 260 270
>>CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 (263 aa)
initn: 326 init1: 155 opt: 313 Z-score: 407.4 bits: 82.8 E(32554): 2.3e-16
Smith-Waterman score: 313; 29.8% identity (59.5% similar) in 205 aa overlap (2-202:39-242)
10 20
pF1KB6 MLRAGAPTGDLPRAG--EVHTGTTIMAVEFD
: .:: .:. :. ::: .: .:
CCDS95 RPLPVNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLHGTTTLAFKFR
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB6 GGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIE
::....:::..:: ..... :. .. . ...:.::: . . : : ... ..
CCDS95 HGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELR
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 LEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-GTLGGMLTRQPFAIG
.: : ::.... :. :.:. :: :. :::.: : : . :. .. :..:
CCDS95 NKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVG
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 GSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRV
:::.. :: .: .:. . :. .. :: : ::. :::.. : . :
CCDS95 -SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVS
190 200 210 220 230 240
210
pF1KB6 ILGNELPKFYDE
CCDS95 SDNVADLHEKYSGSTP
250 260
>>CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 (300 aa)
initn: 312 init1: 154 opt: 295 Z-score: 383.4 bits: 78.5 E(32554): 4.9e-15
Smith-Waterman score: 297; 30.7% identity (57.2% similar) in 215 aa overlap (3-205:23-235)
10 20 30
pF1KB6 MLRAGA---PTGDLPRAG-EVHT-----GTTIMAVEFDGG
:::. : : :.. ..: ::: .: .: :
CCDS41 MALQDVCKWQSPDTQGPSPHLPRAGGWAVPRGCDPQTFLQIHGPRLAHGTTTLAFRFRHG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 VVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELE
:. ..:.: : : :. . :. :.:... . ::..:: . . .:.:. ..
CCDS41 VIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREG
70 80 90 100 110 120
100 110 120 130 140
pF1KB6 EPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGG
. : : .::... . .:: :: . . ::: : : ... . : : . :..:
CCDS41 QLPSVASAAKLLSAMMSQYRGLDLCVATALCGWD-RSGPELFYVYSDGTRLQGDIFSVG-
130 140 150 160 170
150 160 170 180 190 200
pF1KB6 SGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVI
::: . :: .: .:. :: .: .. :.: : ::. ::: . : . .: .:
CCDS41 SGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSR
180 190 200 210 220 230
210
pF1KB6 LGNELPKFYDE
CCDS41 SDACVLYVELQKLLEPEPEEDASHAHPEPATAHRAAEDRELSVGPGEVTPGDSRMPAGTE
240 250 260 270 280 290
219 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:20:38 2016 done: Fri Nov 4 10:20:38 2016
Total Scan time: 1.390 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]