FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6992, 252 aa
  1>>>pF1KB6992 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3722+/-0.000767; mu= 7.6557+/- 0.046
 mean_var=163.1507+/-33.004, 0's: 0 Z-trim(114.3): 7  B-trim: 129 in 1/51
 Lambda= 0.100411
 statistics sampled from 14901 (14906) to 14901 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.458), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS32231.1 DUT gene_id:1854|Hs108|chr15           ( 252) 1705 257.9 4.8e-69
CCDS81879.1 DUT gene_id:1854|Hs108|chr15           ( 167) 1068 165.5 2.1e-41
CCDS45255.1 DUT gene_id:1854|Hs108|chr15           ( 164) 1052 163.1   1e-40
CCDS45256.1 DUT gene_id:1854|Hs108|chr15           ( 141)  934 146.0 1.3e-35


>>CCDS32231.1 DUT gene_id:1854|Hs108|chr15                (252 aa)
 initn: 1705 init1: 1705 opt: 1705  Z-score: 1353.0  bits: 257.9 E(32554): 4.8e-69
Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB6 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE
              190       200       210       220       230       240

              250  
pF1KB6 RGSGGFGSTGKN
       ::::::::::::
CCDS32 RGSGGFGSTGKN
              250  

>>CCDS81879.1 DUT gene_id:1854|Hs108|chr15                (167 aa)
 initn: 1062 init1: 1062 opt: 1068  Z-score: 856.7  bits: 165.5 E(32554): 2.1e-41
Smith-Waterman score: 1068; 97.0% identity (98.2% similar) in 168 aa overlap (85-252:3-167)

           60        70        80        90       100       110    
pF1KB6 RPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQL
                                     :::.   .::::::::::::::::::::::
CCDS81                             MAAGGA---APETPAISPSKRARPAEVGGMQL
                                              10        20         

          120       130       140       150       160       170    
pF1KB6 RFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRS
      30        40        50        60        70        80         

          180       190       200       210       220       230    
pF1KB6 GLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQ
      90       100       110       120       130       140         

          240       250  
pF1KB6 ALDDTERGSGGFGSTGKN
       ::::::::::::::::::
CCDS81 ALDDTERGSGGFGSTGKN
     150       160       

>>CCDS45255.1 DUT gene_id:1854|Hs108|chr15                (164 aa)
 initn: 1052 init1: 1052 opt: 1052  Z-score: 844.3  bits: 163.1 E(32554): 1e-40
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 159 aa overlap (94-252:6-164)

            70        80        90       100       110       120   
pF1KB6 SQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHA
                                     ::::::::::::::::::::::::::::::
CCDS45                          MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHA
                                        10        20        30     

           130       140       150       160       170       180   
pF1KB6 TAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFID
          40        50        60        70        80        90     

           190       200       210       220       230       240   
pF1KB6 VGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGS
         100       110       120       130       140       150     

           250  
pF1KB6 GGFGSTGKN
       :::::::::
CCDS45 GGFGSTGKN
         160    

>>CCDS45256.1 DUT gene_id:1854|Hs108|chr15                (141 aa)
 initn: 934 init1: 934 opt: 934  Z-score: 752.8  bits: 146.0 E(32554): 1.3e-35
Smith-Waterman score: 934; 100.0% identity (100.0% similar) in 141 aa overlap (112-252:1-141)

              90       100       110       120       130       140 
pF1KB6 LPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSA
                                     ::::::::::::::::::::::::::::::
CCDS45                               MQLRFARLSEHATAPTRGSARAAGYDLYSA
                                             10        20        30

             150       160       170       180       190       200 
pF1KB6 YDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVL
               40        50        60        70        80        90

             210       220       230       240       250  
pF1KB6 FNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN
              100       110       120       130       140 




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:08:37 2016 done: Fri Nov  4 10:08:38 2016
 Total Scan time:  2.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]