FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6992, 252 aa
  1>>>pF1KB6992 252 - 252 aa - 252 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4587+/-0.000328; mu= 7.1026+/- 0.020
 mean_var=175.4959+/-36.271, 0's: 0 Z-trim(121.7): 5  B-trim: 641 in 1/57
 Lambda= 0.096815
 statistics sampled from 38568 (38573) to 38568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.452), width:  16
 Scan time:  6.990

The best scores are:                                      opt bits E(85289)
NP_001020419 (OMIM: 601266) deoxyuridine 5'-tripho ( 252) 1705 249.3 4.8e-66
XP_016877477 (OMIM: 601266) PREDICTED: deoxyuridin ( 200) 1277 189.5   4e-48
NP_001317215 (OMIM: 601266) deoxyuridine 5'-tripho ( 167) 1068 160.2 2.2e-39
NP_001939 (OMIM: 601266) deoxyuridine 5'-triphosph ( 164) 1052 157.9   1e-38
NP_001020420 (OMIM: 601266) deoxyuridine 5'-tripho ( 141)  934 141.4 8.2e-34


>>NP_001020419 (OMIM: 601266) deoxyuridine 5'-triphospha  (252 aa)
 initn: 1705 init1: 1705 opt: 1705  Z-score: 1306.7  bits: 249.3 E(85289): 4.8e-66
Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB6 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE
              190       200       210       220       230       240

              250  
pF1KB6 RGSGGFGSTGKN
       ::::::::::::
NP_001 RGSGGFGSTGKN
              250  

>>XP_016877477 (OMIM: 601266) PREDICTED: deoxyuridine 5'  (200 aa)
 initn: 1293 init1: 1277 opt: 1277  Z-score: 985.0  bits: 189.5 E(85289): 4e-48
Smith-Waterman score: 1277; 99.5% identity (99.5% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE
       ::::::: :                                                   
XP_016 FIDVGAGFIFISNFFINIKV                                        
              190       200                                        

>>NP_001317215 (OMIM: 601266) deoxyuridine 5'-triphospha  (167 aa)
 initn: 1062 init1: 1062 opt: 1068  Z-score: 828.2  bits: 160.2 E(85289): 2.2e-39
Smith-Waterman score: 1068; 97.0% identity (98.2% similar) in 168 aa overlap (85-252:3-167)

           60        70        80        90       100       110    
pF1KB6 RPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQL
                                     :::.   .::::::::::::::::::::::
NP_001                             MAAGGA---APETPAISPSKRARPAEVGGMQL
                                              10        20         

          120       130       140       150       160       170    
pF1KB6 RFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRS
      30        40        50        60        70        80         

          180       190       200       210       220       230    
pF1KB6 GLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQ
      90       100       110       120       130       140         

          240       250  
pF1KB6 ALDDTERGSGGFGSTGKN
       ::::::::::::::::::
NP_001 ALDDTERGSGGFGSTGKN
     150       160       

>>NP_001939 (OMIM: 601266) deoxyuridine 5'-triphosphate   (164 aa)
 initn: 1052 init1: 1052 opt: 1052  Z-score: 816.2  bits: 157.9 E(85289): 1e-38
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 159 aa overlap (94-252:6-164)

            70        80        90       100       110       120   
pF1KB6 SQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHA
                                     ::::::::::::::::::::::::::::::
NP_001                          MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHA
                                        10        20        30     

           130       140       150       160       170       180   
pF1KB6 TAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFID
          40        50        60        70        80        90     

           190       200       210       220       230       240   
pF1KB6 VGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGS
         100       110       120       130       140       150     

           250  
pF1KB6 GGFGSTGKN
       :::::::::
NP_001 GGFGSTGKN
         160    

>>NP_001020420 (OMIM: 601266) deoxyuridine 5'-triphospha  (141 aa)
 initn: 934 init1: 934 opt: 934  Z-score: 728.0  bits: 141.4 E(85289): 8.2e-34
Smith-Waterman score: 934; 100.0% identity (100.0% similar) in 141 aa overlap (112-252:1-141)

              90       100       110       120       130       140 
pF1KB6 LPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSA
                                     ::::::::::::::::::::::::::::::
NP_001                               MQLRFARLSEHATAPTRGSARAAGYDLYSA
                                             10        20        30

             150       160       170       180       190       200 
pF1KB6 YDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVL
               40        50        60        70        80        90

             210       220       230       240       250  
pF1KB6 FNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN
              100       110       120       130       140 




252 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:08:38 2016 done: Fri Nov  4 10:08:39 2016
 Total Scan time:  6.990 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]