FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6994, 253 aa
  1>>>pF1KB6994 253 - 253 aa - 253 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9103+/-0.000267; mu= 13.9522+/- 0.017
 mean_var=90.9399+/-18.059, 0's: 0 Z-trim(121.5): 1  B-trim: 2 in 1/55
 Lambda= 0.134492
 statistics sampled from 38127 (38128) to 38127 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.447), width:  16
 Scan time:  6.960

The best scores are:                                      opt bits E(85289)
NP_000873 (OMIM: 161560) interleukin-12 subunit al ( 253) 1671 333.1 2.8e-91


>>NP_000873 (OMIM: 161560) interleukin-12 subunit alpha   (253 aa)
 initn: 1671 init1: 1671 opt: 1671  Z-score: 1759.6  bits: 333.1 E(85289): 2.8e-91
Smith-Waterman score: 1671; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KB6 MWPPGSASQPPPSPAAATGLHPAARPVSLQCRLSMCPARSLLLVATLVLLDHLSLARNLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MWPPGSASQPPPSPAAATGLHPAARPVSLQCRLSMCPARSLLLVATLVLLDHLSLARNLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VATPDPGMFPCLHHSQNLLRAVSNMLQKARQTLEFYPCTSEEIDHEDITKDKTSTVEACL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VATPDPGMFPCLHHSQNLLRAVSNMLQKARQTLEFYPCTSEEIDHEDITKDKTSTVEACL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PLELTKNESCLNSRETSFITNGSCLASRKTSFMMALCLSSIYEDLKMYQVEFKTMNAKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PLELTKNESCLNSRETSFITNGSCLASRKTSFMMALCLSSIYEDLKMYQVEFKTMNAKLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MDPKRQIFLDQNMLAVIDELMQALNFNSETVPQKSSLEEPDFYKTKIKLCILLHAFRIRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDPKRQIFLDQNMLAVIDELMQALNFNSETVPQKSSLEEPDFYKTKIKLCILLHAFRIRA
              190       200       210       220       230       240

              250   
pF1KB6 VTIDRVMSYLNAS
       :::::::::::::
NP_000 VTIDRVMSYLNAS
              250   




253 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:05:44 2016 done: Fri Nov  4 10:05:45 2016
 Total Scan time:  6.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]