FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6997, 211 aa
  1>>>pF1KB6997 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5050+/-0.000627; mu= 13.5992+/- 0.038
 mean_var=72.1459+/-14.230, 0's: 0 Z-trim(112.4): 19  B-trim: 0 in 0/50
 Lambda= 0.150997
 statistics sampled from 13114 (13133) to 13114 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.403), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS4781.1 BAK1 gene_id:578|Hs108|chr6             ( 211) 1388 310.6 4.7e-85


>>CCDS4781.1 BAK1 gene_id:578|Hs108|chr6                  (211 aa)
 initn: 1388 init1: 1388 opt: 1388  Z-score: 1640.5  bits: 310.6 E(32554): 4.7e-85
Smith-Waterman score: 1388; 97.2% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB6 MASGQGPGPPRQECGEPALPSASEEQVAQDTEEVFRSYVFYHHQQEQEAEGAAAPADPEM
       :::::::::::::::::::::::::::::::::::::::::.:::::::::.::::::::
CCDS47 MASGQGPGPPRQECGEPALPSASEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIASSLFE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS47 VTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGINWGRVVALLGFSYRLALHIYQRGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAA
       ::::::::::::::.::::::.::.:::::::::::::::::::::::::::::::::::
CCDS47 SGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAA
              130       140       150       160       170       180

              190       200       210 
pF1KB6 LNLGNGPILNVLVVLGVVLLGQFVVRRFFKS
       :::::::::::::::::::::::::::::::
CCDS47 LNLGNGPILNVLVVLGVVLLGQFVVRRFFKS
              190       200       210 




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:18:12 2016 done: Sat Nov  5 02:18:13 2016
 Total Scan time:  2.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]