Result of FASTA (ccds) for
pF1KB7009
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7009, 1072 aa
1>>>pF1KB7009 1072 - 1072 aa - 1072 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4400+/-0.000838; mu= 14.6496+/- 0.051
mean_var=159.4399+/-31.952, 0's: 0 Z-trim(113.7): 20 B-trim: 0 in 0/51
Lambda= 0.101572
statistics sampled from 14330 (14345) to 14330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.441), width: 16
Scan time: 5.440
The best scores are: opt bits E(32554)
CCDS41931.1 RNF31 gene_id:55072|Hs108|chr14 (1072) 7573 1122.1 0
CCDS81792.1 RNF31 gene_id:55072|Hs108|chr14 ( 921) 6513 966.7 0
>>CCDS41931.1 RNF31 gene_id:55072|Hs108|chr14 (1072 aa)
initn: 7573 init1: 7573 opt: 7573 Z-score: 6001.2 bits: 1122.1 E(32554): 0
Smith-Waterman score: 7573; 100.0% identity (100.0% similar) in 1072 aa overlap (1-1072:1-1072)
10 20 30 40 50 60
pF1KB7 MPGEEEERAFLVAREELASALRRDSGQAFSLEQLRPLLASSLPLAARYLQLDAARLVRCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPGEEEERAFLVAREELASALRRDSGQAFSLEQLRPLLASSLPLAARYLQLDAARLVRCN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AHGEPRNYLNTLSTALNILEKYGRNLLSPQRPRYWRGVKFNNPVFRSTVDAVQGGRDVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AHGEPRNYLNTLSTALNILEKYGRNLLSPQRPRYWRGVKFNNPVFRSTVDAVQGGRDVLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LYGYTEEQPDGLSFPEGQEEPDEHQVATVTLEVLLLRTELSLLLQNTHPRQQALEQLLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LYGYTEEQPDGLSFPEGQEEPDEHQVATVTLEVLLLRTELSLLLQNTHPRQQALEQLLED
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KVEDDMLQLSEFDPLLREIAPGPLTTPSVPGSTPGPCFLCGSAPGTLHCPSCKQALCPAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KVEDDMLQLSEFDPLLREIAPGPLTTPSVPGSTPGPCFLCGSAPGTLHCPSCKQALCPAC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 DHLFHGHPSRAHHLRQTLPGVLQGTHLSPSLPASAQPRPQSTSLLALGDSSLSSPNPASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DHLFHGHPSRAHHLRQTLPGVLQGTHLSPSLPASAQPRPQSTSLLALGDSSLSSPNPASA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 HLPWHCAACAMLNEPWAVLCVACDRPRGCKGLGLGTEGPQGTGGLEPDLARGRWACQSCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HLPWHCAACAMLNEPWAVLCVACDRPRGCKGLGLGTEGPQGTGGLEPDLARGRWACQSCT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 FENEAAAVLCSICERPRLAQPPSLVVDSRDAGICLQPLQQGDALLASAQSQVWYCIHCTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FENEAAAVLCSICERPRLAQPPSLVVDSRDAGICLQPLQQGDALLASAQSQVWYCIHCTF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 CNSSPGWVCVMCNRTSSPIPAQHAPRPYASSLEKGPPKPGPPRRLSAPLPSSCGDPEKQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CNSSPGWVCVMCNRTSSPIPAQHAPRPYASSLEKGPPKPGPPRRLSAPLPSSCGDPEKQR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 QDKMREEGLQLVSMIREGEAAGACPEEIFSALQYSGTEVPLQWLRSELPYVLEMVAELAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QDKMREEGLQLVSMIREGEAAGACPEEIFSALQYSGTEVPLQWLRSELPYVLEMVAELAG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 QQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVRTRRRKVQELQSLGFGPEEGSLQALFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVRTRRRKVQELQSLGFGPEEGSLQALFQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 HGGDVSRALTELQRQRLEPFRQRLWDSGPEPTPSWDGPDKQSLVRRLLAVYALPSWGRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HGGDVSRALTELQRQRLEPFRQRLWDSGPEPTPSWDGPDKQSLVRRLLAVYALPSWGRAE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 LALSLLQETPRNYELGDVVEAVRHSQDRAFLRRLLAQECAVCGWALPHNRMQALTSCECT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LALSLLQETPRNYELGDVVEAVRHSQDRAFLRRLLAQECAVCGWALPHNRMQALTSCECT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 ICPDCFRQHFTIALKEKHITDMVCPACGRPDLTDDTQLLSYFSTLDIQLRESLEPDAYAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ICPDCFRQHFTIALKEKHITDMVCPACGRPDLTDDTQLLSYFSTLDIQLRESLEPDAYAL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 FHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 CEDFQNWKRMNDPEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CEDFQNWKRMNDPEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB7 CYNAFYAKNKCPEPNCRVKKSLHGHHPRDCLFYLRDWTALRLQKLLQDNNVMFNTEPPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CYNAFYAKNKCPEPNCRVKKSLHGHHPRDCLFYLRDWTALRLQKLLQDNNVMFNTEPPAG
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB7 ARAVPGGGCRVIEQKEVPNGLRDEACGKETPAGYAGLCQAHYKEYLVSLINAHSLDPATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARAVPGGGCRVIEQKEVPNGLRDEACGKETPAGYAGLCQAHYKEYLVSLINAHSLDPATL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070
pF1KB7 YEVEELETATERYLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPRRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YEVEELETATERYLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPRRRK
1030 1040 1050 1060 1070
>>CCDS81792.1 RNF31 gene_id:55072|Hs108|chr14 (921 aa)
initn: 6513 init1: 6513 opt: 6513 Z-score: 5162.6 bits: 966.7 E(32554): 0
Smith-Waterman score: 6513; 99.9% identity (99.9% similar) in 910 aa overlap (163-1072:12-921)
140 150 160 170 180 190
pF1KB7 SFPEGQEEPDEHQVATVTLEVLLLRTELSLLLQNTHPRQQALEQLLEDKVEDDMLQLSEF
: ::::::::::::::::::::::::::::
CCDS81 MDLCTRAGEPSLTQNTHPRQQALEQLLEDKVEDDMLQLSEF
10 20 30 40
200 210 220 230 240 250
pF1KB7 DPLLREIAPGPLTTPSVPGSTPGPCFLCGSAPGTLHCPSCKQALCPACDHLFHGHPSRAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DPLLREIAPGPLTTPSVPGSTPGPCFLCGSAPGTLHCPSCKQALCPACDHLFHGHPSRAH
50 60 70 80 90 100
260 270 280 290 300 310
pF1KB7 HLRQTLPGVLQGTHLSPSLPASAQPRPQSTSLLALGDSSLSSPNPASAHLPWHCAACAML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HLRQTLPGVLQGTHLSPSLPASAQPRPQSTSLLALGDSSLSSPNPASAHLPWHCAACAML
110 120 130 140 150 160
320 330 340 350 360 370
pF1KB7 NEPWAVLCVACDRPRGCKGLGLGTEGPQGTGGLEPDLARGRWACQSCTFENEAAAVLCSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NEPWAVLCVACDRPRGCKGLGLGTEGPQGTGGLEPDLARGRWACQSCTFENEAAAVLCSI
170 180 190 200 210 220
380 390 400 410 420 430
pF1KB7 CERPRLAQPPSLVVDSRDAGICLQPLQQGDALLASAQSQVWYCIHCTFCNSSPGWVCVMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 CERPRLAQPPSLVVDSRDAGICLQPLQQGDALLASAQSQVWYCIHCTFCNSSPGWVCVMC
230 240 250 260 270 280
440 450 460 470 480 490
pF1KB7 NRTSSPIPAQHAPRPYASSLEKGPPKPGPPRRLSAPLPSSCGDPEKQRQDKMREEGLQLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NRTSSPIPAQHAPRPYASSLEKGPPKPGPPRRLSAPLPSSCGDPEKQRQDKMREEGLQLV
290 300 310 320 330 340
500 510 520 530 540 550
pF1KB7 SMIREGEAAGACPEEIFSALQYSGTEVPLQWLRSELPYVLEMVAELAGQQDPGLGAFSCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SMIREGEAAGACPEEIFSALQYSGTEVPLQWLRSELPYVLEMVAELAGQQDPGLGAFSCQ
350 360 370 380 390 400
560 570 580 590 600 610
pF1KB7 EARRAWLDRHGNLDEAVEECVRTRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EARRAWLDRHGNLDEAVEECVRTRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL
410 420 430 440 450 460
620 630 640 650 660 670
pF1KB7 QRQRLEPFRQRLWDSGPEPTPSWDGPDKQSLVRRLLAVYALPSWGRAELALSLLQETPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QRQRLEPFRQRLWDSGPEPTPSWDGPDKQSLVRRLLAVYALPSWGRAELALSLLQETPRN
470 480 490 500 510 520
680 690 700 710 720 730
pF1KB7 YELGDVVEAVRHSQDRAFLRRLLAQECAVCGWALPHNRMQALTSCECTICPDCFRQHFTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YELGDVVEAVRHSQDRAFLRRLLAQECAVCGWALPHNRMQALTSCECTICPDCFRQHFTI
530 540 550 560 570 580
740 750 760 770 780 790
pF1KB7 ALKEKHITDMVCPACGRPDLTDDTQLLSYFSTLDIQLRESLEPDAYALFHKKLTEGVLMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ALKEKHITDMVCPACGRPDLTDDTQLLSYFSTLDIQLRESLEPDAYALFHKKLTEGVLMR
590 600 610 620 630 640
800 810 820 830 840 850
pF1KB7 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMND
650 660 670 680 690 700
860 870 880 890 900 910
pF1KB7 PEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSGCYNAFYAKNKCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSGCYNAFYAKNKCP
710 720 730 740 750 760
920 930 940 950 960 970
pF1KB7 EPNCRVKKSLHGHHPRDCLFYLRDWTALRLQKLLQDNNVMFNTEPPAGARAVPGGGCRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EPNCRVKKSLHGHHPRDCLFYLRDWTALRLQKLLQDNNVMFNTEPPAGARAVPGGGCRVI
770 780 790 800 810 820
980 990 1000 1010 1020 1030
pF1KB7 EQKEVPNGLRDEACGKETPAGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEELETATER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EQKEVPNGLRDEACGKETPAGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEELETATER
830 840 850 860 870 880
1040 1050 1060 1070
pF1KB7 YLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPRRRK
::::::::::::::::::::::::::::::::::::::::
CCDS81 YLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPRRRK
890 900 910 920
1072 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:11:17 2016 done: Thu Nov 3 18:11:18 2016
Total Scan time: 5.440 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]