(Circular) (Six-base) MAPSORT of: pF1KB7012.seq Check: 2747 from: 1 to: 6233 pF1KB7012 6233 bp With 182 enzymes: SgfI * March 2, 2010 14:27 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 146 264 588 1576 2061 146 Size: 118 324 988 485 4318 Fragments arranged by size: 4318 988 485 324 118 AccI GT'mk_AC Cuts at: 431 2423 3271 431 Size: 1992 848 3393 Fragments arranged by size: 3393 1992 848 Acc65I G'GTAC_C Cuts at: 337 1312 3249 337 Size: 975 1937 3321 Fragments arranged by size: 3321 1937 975 AclI AA'CG_TT Cuts at: 6073 6073 Size: 6233 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 158 753 821 1347 3050 4058 4490 4843 5505 Size: 595 68 526 1703 1008 432 353 662 Cuts at: 5505 158 Size: 886 Fragments arranged by size: 1703 1008 886 662 595 526 432 353 68 AflIII A'CryG_T Cuts at: 1862 3585 5385 5666 1862 Size: 1723 1800 281 2429 Fragments arranged by size: 2429 1800 1723 281 AhdI GACnn_n'nnGTC Cuts at: 1893 1893 Size: 6233 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1090 1090 Size: 6233 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1234 1266 2137 2169 1234 Size: 32 871 32 5298 Fragments arranged by size: 5298 871 32 32 AlwNI CAG_nnn'CTG Cuts at: 441 1120 2124 3028 3538 4976 441 Size: 679 1004 904 510 1438 1698 Fragments arranged by size: 1698 1438 1004 904 679 510 ApaI G_GGCC'C Cuts at: 2204 2501 3074 2204 Size: 297 573 5363 Fragments arranged by size: 5363 573 297 ApaLI G'TGCA_C Cuts at: 5071 5071 Size: 6233 ApoI r'AATT_y Cuts at: 508 3056 3237 5586 5842 508 Size: 2548 181 2349 256 899 Fragments arranged by size: 2548 2349 899 256 181 AseI AT'TA_AT Cuts at: 20 20 Size: 6233 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6233 AvaI C'yCGr_G Cuts at: 296 1275 1433 2390 2500 2726 3253 296 Size: 979 158 957 110 226 527 3276 Fragments arranged by size: 3276 979 957 527 226 158 110 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2302 2335 2302 Size: 33 6200 BamHI G'GATC_C Cuts at: 196 3086 3258 196 Size: 2890 172 3171 Fragments arranged by size: 3171 2890 172 BanI G'GyrC_C Cuts at: 337 460 1012 1312 1519 2244 2394 2401 3172 Size: 123 552 300 207 725 150 7 771 Cuts at: 3172 3249 3663 3911 3946 337 Size: 77 414 248 35 2624 Fragments arranged by size: 2624 771 725 552 414 300 248 207 150 123 77 35 7 BanII G_rGCy'C Cuts at: 974 2204 2277 2288 2501 2543 3074 3227 3247 Size: 1230 73 11 213 42 531 153 20 Cuts at: 3247 4277 974 Size: 1030 2930 Fragments arranged by size: 2930 1230 1030 531 213 153 73 42 20 11 BbeI G_GCGC'C Cuts at: 2405 3667 3915 2405 Size: 1262 248 4723 Fragments arranged by size: 4723 1262 248 BbsI GAAGACnn'nnnn_ Cuts at: 233 759 1277 3038 233 Size: 526 518 1761 3428 Fragments arranged by size: 3428 1761 526 518 BbvCI CC'TCA_GC Cuts at: 2531 2531 Size: 6233 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2086 2120 2219 2253 2086 Size: 34 99 34 6066 Fragments arranged by size: 6066 99 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2644 4131 5187 6233 2644 Size: 1487 1056 1046 2644 Fragments arranged by size: 2644 1487 1056 1046 BclI T'GATC_A Cuts at: 1526 3753 1526 Size: 2227 4006 BglI GCCn_nnn'nGGC Cuts at: 1092 1779 2199 1092 Size: 687 420 5126 Fragments arranged by size: 5126 687 420 BglII A'GATC_T Cuts at: 3748 5785 3748 Size: 2037 4196 BlpI GC'TnA_GC Cuts at: 782 968 1082 1261 1984 3345 782 Size: 186 114 179 723 1361 3670 Fragments arranged by size: 3670 1361 723 186 179 114 Bme1580I G_kGCm'C Cuts at: 463 1015 1784 2185 2204 2501 2727 3074 3858 Size: 552 769 401 19 297 226 347 784 Cuts at: 3858 3951 5075 463 Size: 93 1124 1621 Fragments arranged by size: 1621 1124 784 769 552 401 347 297 226 93 19 BmrI ACTGGGnnnn_n' Cuts at: 448 526 2195 2406 2804 3016 3445 3526 3861 Size: 78 1669 211 398 212 429 81 335 Cuts at: 3861 6005 448 Size: 2144 676 Fragments arranged by size: 2144 1669 676 429 398 335 212 211 81 78 BmtI G_CTAG'C Cuts at: 1339 1339 Size: 6233 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4600 4600 Size: 6233 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 293 373 904 1482 1496 1796 2010 2190 3241 Size: 80 531 578 14 300 214 180 1051 Cuts at: 3241 293 Size: 3285 Fragments arranged by size: 3285 1051 578 531 300 214 180 80 14 Bpu10I CC'TnA_GC Cuts at: 2531 2531 Size: 6233 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 1638 2862 3409 4288 5002 5300 1638 Size: 1224 547 879 714 298 2571 Fragments arranged by size: 2571 1224 879 714 547 298 BsaI GGTCTCn'nnnn_ Cuts at: 521 844 1801 2583 5937 521 Size: 323 957 782 3354 817 Fragments arranged by size: 3354 957 817 782 323 BsaAI yAC'GTr Cuts at: 1865 3586 1865 Size: 1721 4512 BsaBI GATnn'nnATC Cuts at: 6 1417 3016 3202 3747 5784 6 Size: 1411 1599 186 545 2037 455 Fragments arranged by size: 2037 1599 1411 545 455 186 BsaHI Gr'CG_yC Cuts at: 651 1383 2302 2402 3664 3912 4614 6110 651 Size: 732 919 100 1262 248 702 1496 774 Fragments arranged by size: 1496 1262 919 774 732 702 248 100 BsaWI w'CCGG_w Cuts at: 1787 2216 3422 3943 4621 5032 5179 5453 1787 Size: 429 1206 521 678 411 147 274 2567 Fragments arranged by size: 2567 1206 678 521 429 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 262 292 1114 1144 1494 1524 1934 1964 262 Size: 30 822 30 350 30 410 30 4531 Fragments arranged by size: 4531 822 410 350 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 159 271 283 535 604 2279 159 Size: 112 12 252 69 1675 4113 Fragments arranged by size: 4113 1675 252 112 69 12 BseYI C'CCAG_C Cuts at: 551 823 843 988 1237 1838 2124 2668 3156 Size: 272 20 145 249 601 286 544 488 Cuts at: 3156 3658 4416 5081 5489 551 Size: 502 758 665 408 1295 Fragments arranged by size: 1295 758 665 601 544 502 488 408 286 272 249 145 20 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1078 1096 1172 2099 2498 2635 1078 Size: 18 76 927 399 137 4676 Fragments arranged by size: 4676 927 399 137 76 18 BsiEI CG_ry'CG Cuts at: 104 3775 3821 5051 104 Size: 3671 46 1230 1286 Fragments arranged by size: 3671 1286 1230 46 BsiHKAI G_wGCw'C Cuts at: 1460 2288 3227 3247 4025 4215 5075 1460 Size: 828 939 20 778 190 860 2618 Fragments arranged by size: 2618 939 860 828 778 190 20 BsmBI CGTCTCn'nnnn_ Cuts at: 2324 2324 Size: 6233 Bsp1286I G_dGCh'C Cuts at: 463 974 1015 1460 1784 2185 2204 2277 2288 Size: 511 41 445 324 401 19 73 11 Cuts at: 2288 2501 2543 2727 3074 3227 3247 3858 3951 Size: 213 42 184 347 153 20 611 93 Cuts at: 3951 4025 4215 4277 5075 463 Size: 74 190 62 798 1621 Fragments arranged by size: 1621 798 611 511 445 401 347 324 213 190 184 153 93 74 73 62 42 41 20 19 11 BspEI T'CCGG_A Cuts at: 2216 2216 Size: 6233 BspHI T'CATG_A Cuts at: 398 543 4665 398 Size: 145 4122 1966 Fragments arranged by size: 4122 1966 145 BspMI ACCTGCnnnn'nnnn_ Cuts at: 146 264 588 864 1145 1253 1576 2061 2354 Size: 118 324 276 281 108 323 485 293 Cuts at: 2354 3283 3497 3799 4180 146 Size: 929 214 302 381 2199 Fragments arranged by size: 2199 929 485 381 324 323 302 293 281 276 214 118 108 BsrBI CCG'CTC Cuts at: 50 4525 4579 6063 6228 50 Size: 4475 54 1484 165 55 Fragments arranged by size: 4475 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 686 2109 4145 686 Size: 1423 2036 2774 Fragments arranged by size: 2774 2036 1423 BsrFI r'CCGG_y Cuts at: 1159 1544 2941 2998 4231 4412 1159 Size: 385 1397 57 1233 181 2980 Fragments arranged by size: 2980 1397 1233 385 181 57 BsrGI T'GTAC_A Cuts at: 683 683 Size: 6233 BssSI C'ACGA_G Cuts at: 2518 4504 5212 2518 Size: 1986 708 3539 Fragments arranged by size: 3539 1986 708 BstAPI GCAn_nnn'nTGC Cuts at: 279 421 3610 279 Size: 142 3189 2902 Fragments arranged by size: 3189 2902 142 BstBI TT'CG_AA Cuts at: 4594 4594 Size: 6233 BstEII G'GTnAC_C Cuts at: 876 876 Size: 6233 BstXI CCAn_nnnn'nTGG Cuts at: 456 744 1914 456 Size: 288 1170 4775 Fragments arranged by size: 4775 1170 288 BstYI r'GATC_y Cuts at: 1 196 983 1412 1818 2468 2651 3086 3258 Size: 195 787 429 406 650 183 435 172 Cuts at: 3258 3725 3748 4083 4329 4635 4647 4733 5785 Size: 467 23 335 246 306 12 86 1052 Cuts at: 5785 1 Size: 449 Fragments arranged by size: 1052 787 650 467 449 435 429 406 335 306 246 195 183 172 86 23 12 Bsu36I CC'TnA_GG Cuts at: 2250 2250 Size: 6233 BtgI C'CryG_G Cuts at: 107 263 1394 1401 1451 1718 1848 1995 2487 Size: 156 1131 7 50 267 130 147 492 Cuts at: 2487 2842 3191 107 Size: 355 349 3149 Fragments arranged by size: 3149 1131 492 355 349 267 156 147 130 50 7 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 2004 3211 4183 4364 4527 2004 Size: 1207 972 181 163 3710 Fragments arranged by size: 3710 1207 972 181 163 BtsI GCAGTG_nn' Cuts at: 961 2510 3476 961 Size: 1549 966 3718 Fragments arranged by size: 3718 1549 966 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 1433 1468 1433 Size: 35 6198 DraI TTT'AAA Cuts at: 3232 3232 Size: 6233 DraIII CAC_nnn'GTG Cuts at: 660 3108 3192 660 Size: 2448 84 3701 Fragments arranged by size: 3701 2448 84 DrdI GACnn_nn'nnGTC Cuts at: 2307 2911 3939 5283 2307 Size: 604 1028 1344 3257 Fragments arranged by size: 3257 1344 1028 604 EaeI y'GGCC_r Cuts at: 731 3039 3818 3992 4383 4410 5755 731 Size: 2308 779 174 391 27 1345 1209 Fragments arranged by size: 2308 1345 1209 779 391 174 27 EagI C'GGCC_G Cuts at: 3818 3818 Size: 6233 EarI CTCTTCn'nnn_ Cuts at: 177 2531 4256 4466 177 Size: 2354 1725 210 1944 Fragments arranged by size: 2354 1944 1725 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1045 1916 3142 4441 5183 5329 6043 1045 Size: 871 1226 1299 742 146 714 1235 Fragments arranged by size: 1299 1235 1226 871 742 714 146 EcoICRI GAG'CTC Cuts at: 2286 3225 3245 2286 Size: 939 20 5274 Fragments arranged by size: 5274 939 20 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 158 293 373 753 821 904 1347 1482 1496 Size: 135 80 380 68 83 443 135 14 Cuts at: 1496 1796 2010 2190 3050 3241 4058 4490 4843 Size: 300 214 180 860 191 817 432 353 Cuts at: 4843 5505 158 Size: 662 886 Fragments arranged by size: 886 860 817 662 443 432 380 353 300 214 191 180 135 135 83 80 68 14 EcoNI CCTnn'n_nnAGG Cuts at: 2358 2358 Size: 6233 EcoO109I rG'GnC_Cy Cuts at: 1242 1933 2201 2774 2904 3070 3372 1242 Size: 691 268 573 130 166 302 4103 Fragments arranged by size: 4103 691 573 302 268 166 130 EcoRI G'AATT_C Cuts at: 508 3237 508 Size: 2729 3504 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 783 4252 783 Size: 3469 2764 FspI TGC'GCA Cuts at: 4014 4014 Size: 6233 HaeII r_GCGC'y Cuts at: 1331 2405 3667 3915 5145 5916 1331 Size: 1074 1262 248 1230 771 1648 Fragments arranged by size: 1648 1262 1230 1074 771 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1114 1146 1494 1526 1879 1911 2273 2305 4075 Size: 32 348 32 353 32 362 32 1770 Cuts at: 4075 4105 4107 4137 1114 Size: 30 2 30 3210 Fragments arranged by size: 3210 1770 362 353 348 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 1488 2295 3272 1488 Size: 807 977 4449 Fragments arranged by size: 4449 977 807 KasI G'GCGC_C Cuts at: 2401 3663 3911 2401 Size: 1262 248 4723 Fragments arranged by size: 4723 1262 248 KpnI G_GTAC'C Cuts at: 341 1316 3253 341 Size: 975 1937 3321 Fragments arranged by size: 3321 1937 975 MluI A'CGCG_T Cuts at: 5666 5666 Size: 6233 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 473 1157 4992 5176 473 Size: 684 3835 184 1530 Fragments arranged by size: 3835 1530 684 184 MscI TGG'CCA Cuts at: 733 3041 3994 733 Size: 2308 953 2972 Fragments arranged by size: 2972 2308 953 MslI CAynn'nnrTG Cuts at: 1072 1867 2827 3127 3133 4222 4349 1072 Size: 795 960 300 6 1089 127 2956 Fragments arranged by size: 2956 1089 960 795 300 127 6 MspA1I CmG'CkG Cuts at: 375 608 967 1396 1403 1842 1988 2261 2489 Size: 233 359 429 7 439 146 273 228 Cuts at: 2489 2530 2686 2735 2844 3344 3658 4018 4802 Size: 41 156 49 109 500 314 360 784 Cuts at: 4802 5047 375 Size: 245 1561 Fragments arranged by size: 1561 784 500 439 429 360 359 314 273 245 233 228 156 146 109 49 41 7 NaeI GCC'GGC Cuts at: 1161 4414 1161 Size: 3253 2980 NarI GG'CG_CC Cuts at: 2402 3664 3912 2402 Size: 1262 248 4723 Fragments arranged by size: 4723 1262 248 NcoI C'CATG_G Cuts at: 107 1718 1848 107 Size: 1611 130 4492 Fragments arranged by size: 4492 1611 130 NgoMIV G'CCGG_C Cuts at: 1159 4412 1159 Size: 3253 2980 NheI G'CTAG_C Cuts at: 1335 1335 Size: 6233 NspI r_CATG'y Cuts at: 290 1284 3286 3786 5389 290 Size: 994 2002 500 1603 1134 Fragments arranged by size: 2002 1603 1134 994 500 PasI CC'CwG_GG Cuts at: 192 2543 192 Size: 2351 3882 PciI A'CATG_T Cuts at: 5385 5385 Size: 6233 PflMI CCAn_nnn'nTGG Cuts at: 378 441 1293 1881 2564 3048 3169 3192 378 Size: 63 852 588 683 484 121 23 3419 Fragments arranged by size: 3419 852 683 588 484 121 63 23 PfoI T'CCnGG_A Cuts at: 2866 2866 Size: 6233 PmeI GTTT'AAAC Cuts at: 3232 3232 Size: 6233 PmlI CAC'GTG Cuts at: 1865 1865 Size: 6233 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4679 4711 4679 Size: 32 6201 PpuMI rG'GwC_Cy Cuts at: 1242 1933 2904 1242 Size: 691 971 4571 Fragments arranged by size: 4571 971 691 PshAI GACnn'nnGTC Cuts at: 650 650 Size: 6233 PspOMI G'GGCC_C Cuts at: 2200 2497 3070 2200 Size: 297 573 5363 Fragments arranged by size: 5363 573 297 PstI C_TGCA'G Cuts at: 506 983 2058 2937 3096 3280 3965 506 Size: 477 1075 879 159 184 685 2774 Fragments arranged by size: 2774 1075 879 685 477 184 159 PvuI CG_AT'CG Cuts at: 104 104 Size: 6233 PvuII CAG'CTG Cuts at: 375 967 1842 1988 2530 2686 3658 4018 375 Size: 592 875 146 542 156 972 360 2590 Fragments arranged by size: 2590 972 875 592 542 360 156 146 RsrII CG'GwC_CG Cuts at: 2691 4428 2691 Size: 1737 4496 SacI G_AGCT'C Cuts at: 2288 3227 3247 2288 Size: 939 20 5274 Fragments arranged by size: 5274 939 20 SacII CC_GC'GG Cuts at: 1397 1404 2490 2845 1397 Size: 7 1086 355 4785 Fragments arranged by size: 4785 1086 355 7 SalI G'TCGA_C Cuts at: 3270 3270 Size: 6233 SanDI GG'GwC_CC Cuts at: 2904 2904 Size: 6233 SapI GCTCTTCn'nnn_ Cuts at: 2531 4256 4466 2531 Size: 1725 210 4298 Fragments arranged by size: 4298 1725 210 SbfI CC_TGCA'GG Cuts at: 2058 3280 2058 Size: 1222 5011 ScaI AGT'ACT Cuts at: 2416 5750 2416 Size: 3334 2899 SexAI A'CCwGG_T Cuts at: 389 389 Size: 6233 SfcI C'TryA_G Cuts at: 33 502 979 1175 1690 2054 2424 2933 3092 Size: 469 477 196 515 364 370 509 159 Cuts at: 3092 3276 3961 4929 5120 33 Size: 184 685 968 191 1146 Fragments arranged by size: 1146 968 685 515 509 477 469 370 364 196 191 184 159 SfoI GGC'GCC Cuts at: 2403 3665 3913 2403 Size: 1262 248 4723 Fragments arranged by size: 4723 1262 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6233 SmaI CCC'GGG Cuts at: 298 1435 2392 3255 298 Size: 1137 957 863 3276 Fragments arranged by size: 3276 1137 957 863 SmlI C'TyrA_G Cuts at: 1653 2877 3388 4303 5017 5279 1653 Size: 1224 511 915 714 262 2607 Fragments arranged by size: 2607 1224 915 714 511 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6233 SphI G_CATG'C Cuts at: 290 3286 3786 290 Size: 2996 500 2737 Fragments arranged by size: 2996 2737 500 SrfI GCCC'GGGC Cuts at: 298 298 Size: 6233 StyI C'CwwG_G Cuts at: 107 410 515 1040 1718 1848 1898 2558 3367 Size: 303 105 525 678 130 50 660 809 Cuts at: 3367 3721 107 Size: 354 2619 Fragments arranged by size: 2619 809 678 660 525 354 303 130 105 50 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 837 1663 2708 3816 3949 4408 4617 837 Size: 826 1045 1108 133 459 209 2453 Fragments arranged by size: 2453 1108 1045 826 459 209 133 TatI w'GTAC_w Cuts at: 683 1859 2027 2414 2522 5748 683 Size: 1176 168 387 108 3226 1168 Fragments arranged by size: 3226 1176 1168 387 168 108 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 646 678 1934 1966 5750 5782 646 Size: 32 1256 32 3784 32 1097 Fragments arranged by size: 3784 1256 1097 32 32 32 Tth111I GACn'n_nGTC Cuts at: 4030 4030 Size: 6233 XbaI T'CTAG_A Cuts at: 3264 3264 Size: 6233 XcmI CCAnnnn_n'nnnnTGG Cuts at: 741 1263 1846 2175 3728 741 Size: 522 583 329 1553 3246 Fragments arranged by size: 3246 1553 583 522 329 XmaI C'CCGG_G Cuts at: 296 1433 2390 3253 296 Size: 1137 957 863 3276 Fragments arranged by size: 3276 1137 957 863 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AhdI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NheI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PspOMI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SbfI ScaI SexAI SfcI SfoI SgfI SmaI SmlI SpeI SphI SrfI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AatII AfeI AflII AgeI AleI AscI AvrII BfrBI BmgBI BsiWI BsmI BssHII BstZ17I ClaI EcoRV FseI FspAI HindIII HpaI MfeI NdeI NotI NruI NsiI PacI PsiI PspXI PsrI SfiI SgrAI SnaBI SspI StuI SwaI XhoI XmnI ZraI