(Circular) (Six-base) MAPSORT of: pF1KB7015.seq Check: 3238 from: 1 to: 5531 pF1KB7015 5531 bp With 182 enzymes: SgfI * April 24, 2009 13:07 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 381 796 1129 1858 381 Size: 415 333 729 4054 Fragments arranged by size: 4054 729 415 333 AatII G_ACGT'C Cuts at: 2138 2374 2138 Size: 236 5295 AccI GT'mk_AC Cuts at: 2117 2569 2117 Size: 452 5079 Acc65I G'GTAC_C Cuts at: 2547 2547 Size: 5531 AclI AA'CG_TT Cuts at: 5371 5371 Size: 5531 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 453 694 2248 3356 3788 4141 4803 453 Size: 241 1554 1108 432 353 662 1181 Fragments arranged by size: 1554 1181 1108 662 432 353 241 AfeI AGC'GCT Cuts at: 850 850 Size: 5531 AflIII A'CryG_T Cuts at: 1391 2883 4683 4964 1391 Size: 1492 1800 281 1958 Fragments arranged by size: 1958 1800 1492 281 AhdI GACnn_n'nnGTC Cuts at: 1674 1890 2139 1674 Size: 216 249 5066 Fragments arranged by size: 5066 249 216 AleI CACnn'nnGTG Cuts at: 470 541 2129 470 Size: 71 1588 3872 Fragments arranged by size: 3872 1588 71 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 739 739 Size: 5531 AlwNI CAG_nnn'CTG Cuts at: 387 396 643 2836 4274 387 Size: 9 247 2193 1438 1644 Fragments arranged by size: 2193 1644 1438 247 9 ApaI G_GGCC'C Cuts at: 229 320 380 558 1006 1453 1518 1757 229 Size: 91 60 178 448 447 65 239 4003 Fragments arranged by size: 4003 448 447 239 178 91 65 60 ApaLI G'TGCA_C Cuts at: 1339 2032 4369 1339 Size: 693 2337 2501 Fragments arranged by size: 2501 2337 693 ApoI r'AATT_y Cuts at: 2535 4884 5140 2535 Size: 2349 256 2926 Fragments arranged by size: 2926 2349 256 AseI AT'TA_AT Cuts at: 20 20 Size: 5531 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 5531 AvaI C'yCGr_G Cuts at: 222 298 498 574 1477 1511 1824 1861 1913 Size: 76 200 76 903 34 313 37 52 Cuts at: 1913 2024 2421 2551 222 Size: 111 397 130 3202 Fragments arranged by size: 3202 903 397 313 200 130 111 76 76 52 37 34 BamHI G'GATC_C Cuts at: 2556 2556 Size: 5531 BanI G'GyrC_C Cuts at: 112 163 351 762 1735 2091 2400 2547 2961 Size: 51 188 411 973 356 309 147 414 Cuts at: 2961 3209 3244 112 Size: 248 35 2399 Fragments arranged by size: 2399 973 414 411 356 309 248 188 147 51 35 BanII G_rGCy'C Cuts at: 229 236 320 380 558 1006 1330 1405 1453 Size: 7 84 60 178 448 324 75 48 Cuts at: 1453 1478 1518 1757 2185 2216 2518 2545 3575 Size: 25 40 239 428 31 302 27 1030 Cuts at: 3575 229 Size: 2185 Fragments arranged by size: 2185 1030 448 428 324 302 239 178 84 75 60 48 40 31 27 25 7 BbeI G_GCGC'C Cuts at: 116 167 1739 2095 2404 2965 3213 116 Size: 51 1572 356 309 561 248 2434 Fragments arranged by size: 2434 1572 561 356 309 248 51 BbsI GAAGACnn'nnnn_ Cuts at: 249 518 2062 249 Size: 269 1544 3718 Fragments arranged by size: 3718 1544 269 BbvCI CC'TCA_GC Cuts at: 530 1237 530 Size: 707 4824 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1468 1502 1468 Size: 34 5497 BciVI GTATCCnnnnn_n' Cuts at: 3429 4485 5531 3429 Size: 1056 1046 3429 Fragments arranged by size: 3429 1056 1046 BclI T'GATC_A Cuts at: 2282 3051 2282 Size: 769 4762 BglI GCCn_nnn'nGGC Cuts at: 157 384 607 1010 1130 157 Size: 227 223 403 120 4558 Fragments arranged by size: 4558 403 227 223 120 BglII A'GATC_T Cuts at: 1346 2165 3046 5083 1346 Size: 819 881 2037 1794 Fragments arranged by size: 2037 1794 881 819 BlpI GC'TnA_GC Cuts at: 283 2643 283 Size: 2360 3171 Bme1580I G_kGCm'C Cuts at: 229 320 356 380 558 767 1006 1343 1453 Size: 91 36 24 178 209 239 337 110 Cuts at: 1453 1518 1757 2036 3156 3249 4373 229 Size: 65 239 279 1120 93 1124 1387 Fragments arranged by size: 1387 1124 1120 337 279 239 239 209 178 110 93 91 65 36 24 BmgBI CAC'GTC Cuts at: 840 918 2031 840 Size: 78 1113 4340 Fragments arranged by size: 4340 1113 78 BmrI ACTGGGnnnn_n' Cuts at: 2743 2824 3159 5303 2743 Size: 81 335 2144 2971 Fragments arranged by size: 2971 2144 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1095 2433 3898 1095 Size: 1338 1465 2728 Fragments arranged by size: 2728 1465 1338 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 865 1402 2430 865 Size: 537 1028 3966 Fragments arranged by size: 3966 1028 537 Bpu10I CC'TnA_GC Cuts at: 530 1237 530 Size: 707 4824 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 955 1018 1348 2707 3586 4300 4598 955 Size: 63 330 1359 879 714 298 1888 Fragments arranged by size: 1888 1359 879 714 330 298 63 BsaI GGTCTCn'nnnn_ Cuts at: 5235 5235 Size: 5531 BsaAI yAC'GTr Cuts at: 978 1764 2884 978 Size: 786 1120 3625 Fragments arranged by size: 3625 1120 786 BsaBI GATnn'nnATC Cuts at: 6 2002 3045 5082 6 Size: 1996 1043 2037 455 Fragments arranged by size: 2037 1996 1043 455 BsaHI Gr'CG_yC Cuts at: 113 164 1106 1736 2092 2135 2371 2401 2962 Size: 51 942 630 356 43 236 30 561 Cuts at: 2962 3210 3912 5408 113 Size: 248 702 1496 236 Fragments arranged by size: 1496 942 702 630 561 356 248 236 236 51 43 30 BsaWI w'CCGG_w Cuts at: 2720 3241 3919 4330 4477 4751 2720 Size: 521 678 411 147 274 3500 Fragments arranged by size: 3500 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 400 430 474 504 790 820 1333 1363 1918 Size: 30 44 30 286 30 513 30 555 Cuts at: 1918 1948 400 Size: 30 3983 Fragments arranged by size: 3983 555 513 286 44 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 159 1201 1204 1879 2224 2442 159 Size: 1042 3 675 345 218 3248 Fragments arranged by size: 3248 1042 675 345 218 3 BseYI C'CCAG_C Cuts at: 380 636 906 1731 2175 2440 2503 2956 3714 Size: 256 270 825 444 265 63 453 758 Cuts at: 3714 4379 4787 380 Size: 665 408 1124 Fragments arranged by size: 1124 825 758 665 453 444 408 270 265 256 63 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1725 2247 1725 Size: 522 5009 BsiEI CG_ry'CG Cuts at: 104 611 2070 3073 3119 4349 104 Size: 507 1459 1003 46 1230 1286 Fragments arranged by size: 1459 1286 1230 1003 507 46 BsiHKAI G_wGCw'C Cuts at: 704 1034 1343 1405 1478 2036 2216 2545 3323 Size: 330 309 62 73 558 180 329 778 Cuts at: 3323 3513 4373 704 Size: 190 860 1862 Fragments arranged by size: 1862 860 778 558 330 329 309 190 180 73 62 BsmI GAATG_Cn' Cuts at: 405 405 Size: 5531 Bsp1286I G_dGCh'C Cuts at: 229 236 320 356 380 558 704 767 1006 Size: 7 84 36 24 178 146 63 239 Cuts at: 1006 1034 1330 1343 1405 1453 1478 1518 1757 Size: 28 296 13 62 48 25 40 239 Cuts at: 1757 2036 2185 2216 2518 2545 3156 3249 3323 Size: 279 149 31 302 27 611 93 74 Cuts at: 3323 3513 3575 4373 229 Size: 190 62 798 1387 Fragments arranged by size: 1387 798 611 302 296 279 239 239 190 178 149 146 93 84 74 63 62 62 48 40 36 31 28 27 25 24 13 7 BspHI T'CATG_A Cuts at: 3963 3963 Size: 5531 BspMI ACCTGCnnnn'nnnn_ Cuts at: 381 796 1129 1736 1802 1858 2492 2581 2795 Size: 415 333 607 66 56 634 89 214 Cuts at: 2795 3097 3478 381 Size: 302 381 2434 Fragments arranged by size: 2434 634 607 415 381 333 302 214 89 66 56 BsrBI CCG'CTC Cuts at: 50 211 579 1362 3823 3877 5361 5526 50 Size: 161 368 783 2461 54 1484 165 55 Fragments arranged by size: 2461 1484 783 368 165 161 55 54 BsrDI GCAATG_nn' Cuts at: 1977 3443 1977 Size: 1466 4065 BsrFI r'CCGG_y Cuts at: 160 434 606 860 2069 3529 3710 160 Size: 274 172 254 1209 1460 181 1981 Fragments arranged by size: 1981 1460 1209 274 254 181 172 BsrGI T'GTAC_A Cuts at: 938 2276 938 Size: 1338 4193 BssSI C'ACGA_G Cuts at: 409 3802 4510 409 Size: 3393 708 1430 Fragments arranged by size: 3393 1430 708 BstAPI GCAn_nnn'nTGC Cuts at: 2908 2908 Size: 5531 BstBI TT'CG_AA Cuts at: 3892 3892 Size: 5531 BstEII G'GTnAC_C Cuts at: 1789 1980 1789 Size: 191 5340 BstYI r'GATC_y Cuts at: 1 1346 2165 2556 3023 3046 3381 3627 3933 Size: 1345 819 391 467 23 335 246 306 Cuts at: 3933 3945 4031 5083 1 Size: 12 86 1052 449 Fragments arranged by size: 1345 1052 819 467 449 391 335 306 246 86 23 12 Bsu36I CC'TnA_GG Cuts at: 1440 2096 2454 1440 Size: 656 358 4517 Fragments arranged by size: 4517 656 358 BtgI C'CryG_G Cuts at: 107 146 311 693 774 107 Size: 39 165 382 81 4864 Fragments arranged by size: 4864 382 165 81 39 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1410 3481 3662 3825 1410 Size: 2071 181 163 3116 Fragments arranged by size: 3116 2071 181 163 BtsI GCAGTG_nn' Cuts at: 742 927 1224 2514 2774 742 Size: 185 297 1290 260 3499 Fragments arranged by size: 3499 1290 297 260 185 DraI TTT'AAA Cuts at: 2530 2530 Size: 5531 DrdI GACnn_nn'nnGTC Cuts at: 3237 4581 3237 Size: 1344 4187 EaeI y'GGCC_r Cuts at: 143 149 158 237 599 608 887 1460 1557 Size: 6 9 79 362 9 279 573 97 Cuts at: 1557 1781 2067 2427 3116 3290 3681 3708 5053 Size: 224 286 360 689 174 391 27 1345 Cuts at: 5053 143 Size: 621 Fragments arranged by size: 1345 689 621 573 391 362 360 286 279 224 174 97 79 27 9 9 6 EagI C'GGCC_G Cuts at: 608 2067 3116 608 Size: 1459 1049 3023 Fragments arranged by size: 3023 1459 1049 EarI CTCTTCn'nnn_ Cuts at: 2221 3554 3764 2221 Size: 1333 210 3988 Fragments arranged by size: 3988 1333 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1588 3739 4481 4627 5341 1588 Size: 2151 742 146 714 1778 Fragments arranged by size: 2151 1778 742 714 146 EcoICRI GAG'CTC Cuts at: 1403 1476 2214 2543 1403 Size: 73 738 329 4391 Fragments arranged by size: 4391 738 329 73 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 453 694 865 1402 2248 2430 3356 3788 4141 Size: 241 171 537 846 182 926 432 353 Cuts at: 4141 4803 453 Size: 662 1181 Fragments arranged by size: 1181 926 846 662 537 432 353 241 182 171 EcoNI CCTnn'n_nnAGG Cuts at: 1543 2316 1543 Size: 773 4758 EcoO109I rG'GnC_Cy Cuts at: 316 376 377 422 554 555 1449 1450 1659 Size: 60 1 45 132 1 894 1 209 Cuts at: 1659 1754 1884 1956 2151 2346 2670 316 Size: 95 130 72 195 195 324 3177 Fragments arranged by size: 3177 894 324 209 195 195 132 130 95 72 60 45 1 1 1 EcoRI G'AATT_C Cuts at: 2535 2535 Size: 5531 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 3550 3550 Size: 5531 FspI TGC'GCA Cuts at: 1303 1423 3312 1303 Size: 120 1889 3522 Fragments arranged by size: 3522 1889 120 FspAI rTGC'GCAy Cuts at: 1423 1423 Size: 5531 HaeII r_GCGC'y Cuts at: 116 167 852 1049 1739 2095 2404 2965 3213 Size: 51 685 197 690 356 309 561 248 Cuts at: 3213 4443 5214 116 Size: 1230 771 433 Fragments arranged by size: 1230 771 690 685 561 433 356 309 248 197 51 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 474 478 506 510 1660 1692 1876 1908 2125 Size: 4 28 4 1150 32 184 32 217 Cuts at: 2125 2157 3373 3403 3405 3435 474 Size: 32 1216 30 2 30 2570 Fragments arranged by size: 2570 1216 1150 217 184 32 32 32 30 30 28 4 4 2 HincII GTy'rAC Cuts at: 2570 2570 Size: 5531 KasI G'GCGC_C Cuts at: 112 163 1735 2091 2400 2961 3209 112 Size: 51 1572 356 309 561 248 2434 Fragments arranged by size: 2434 1572 561 356 309 248 51 KpnI G_GTAC'C Cuts at: 2551 2551 Size: 5531 MluI A'CGCG_T Cuts at: 1391 4964 1391 Size: 3573 1958 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1412 1430 1646 4290 4474 1412 Size: 18 216 2644 184 2469 Fragments arranged by size: 2644 2469 216 184 18 MscI TGG'CCA Cuts at: 151 1462 2429 3292 151 Size: 1311 967 863 2390 Fragments arranged by size: 2390 1311 967 863 MslI CAynn'nnrTG Cuts at: 470 541 1270 2129 2203 2284 3520 3647 470 Size: 71 729 859 74 81 1236 127 2354 Fragments arranged by size: 2354 1236 859 729 127 81 74 71 MspA1I CmG'CkG Cuts at: 266 384 431 441 632 643 695 776 2337 Size: 118 47 10 191 11 52 81 1561 Cuts at: 2337 2642 2956 3316 4100 4345 266 Size: 305 314 360 784 245 1452 Fragments arranged by size: 1561 1452 784 360 314 305 245 191 118 81 52 47 11 10 NaeI GCC'GGC Cuts at: 162 436 608 2071 3712 162 Size: 274 172 1463 1641 1981 Fragments arranged by size: 1981 1641 1463 274 172 NarI GG'CG_CC Cuts at: 113 164 1736 2092 2401 2962 3210 113 Size: 51 1572 356 309 561 248 2434 Fragments arranged by size: 2434 1572 561 356 309 248 51 NcoI C'CATG_G Cuts at: 107 311 107 Size: 204 5327 NgoMIV G'CCGG_C Cuts at: 160 434 606 2069 3710 160 Size: 274 172 1463 1641 1981 Fragments arranged by size: 1981 1641 1463 274 172 NspI r_CATG'y Cuts at: 2305 2584 3084 4687 2305 Size: 279 500 1603 3149 Fragments arranged by size: 3149 1603 500 279 PasI CC'CwG_GG Cuts at: 1527 1527 Size: 5531 PciI A'CATG_T Cuts at: 4683 4683 Size: 5531 PflMI CCAn_nnn'nTGG Cuts at: 326 643 668 2244 326 Size: 317 25 1576 3613 Fragments arranged by size: 3613 1576 317 25 PmeI GTTT'AAAC Cuts at: 2530 2530 Size: 5531 PmlI CAC'GTG Cuts at: 978 978 Size: 5531 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3977 4009 3977 Size: 32 5499 PpuMI rG'GwC_Cy Cuts at: 1659 1884 1956 2151 2346 1659 Size: 225 72 195 195 4844 Fragments arranged by size: 4844 225 195 195 72 PshAI GACnn'nnGTC Cuts at: 1374 1374 Size: 5531 PspOMI G'GGCC_C Cuts at: 225 316 376 554 1002 1449 1514 1753 225 Size: 91 60 178 448 447 65 239 4003 Fragments arranged by size: 4003 448 447 239 178 91 65 60 PspXI vC'TCGA_Gb Cuts at: 1477 1477 Size: 5531 PstI C_TGCA'G Cuts at: 392 875 2578 3263 392 Size: 483 1703 685 2660 Fragments arranged by size: 2660 1703 685 483 PvuI CG_AT'CG Cuts at: 104 104 Size: 5531 PvuII CAG'CTG Cuts at: 431 2337 2956 3316 431 Size: 1906 619 360 2646 Fragments arranged by size: 2646 1906 619 360 RsrII CG'GwC_CG Cuts at: 771 3726 771 Size: 2955 2576 SacI G_AGCT'C Cuts at: 1405 1478 2216 2545 1405 Size: 73 738 329 4391 Fragments arranged by size: 4391 738 329 73 SacII CC_GC'GG Cuts at: 696 777 696 Size: 81 5450 SalI G'TCGA_C Cuts at: 2568 2568 Size: 5531 SapI GCTCTTCn'nnn_ Cuts at: 2221 3554 3764 2221 Size: 1333 210 3988 Fragments arranged by size: 3988 1333 210 SbfI CC_TGCA'GG Cuts at: 875 2578 875 Size: 1703 3828 ScaI AGT'ACT Cuts at: 1927 2416 5048 1927 Size: 489 2632 2410 Fragments arranged by size: 2632 2410 489 SexAI A'CCwGG_T Cuts at: 1670 1886 1904 1670 Size: 216 18 5297 Fragments arranged by size: 5297 216 18 SfcI C'TryA_G Cuts at: 33 388 426 871 2574 3259 4227 4418 33 Size: 355 38 445 1703 685 968 191 1146 Fragments arranged by size: 1703 1146 968 685 445 355 191 38 SfiI GGCCn_nnn'nGGCC Cuts at: 157 607 157 Size: 450 5081 SfoI GGC'GCC Cuts at: 114 165 1737 2093 2402 2963 3211 114 Size: 51 1572 356 309 561 248 2434 Fragments arranged by size: 2434 1572 561 356 309 248 51 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 5531 SmaI CCC'GGG Cuts at: 224 300 1826 1915 2026 2423 2553 224 Size: 76 1526 89 111 397 130 3202 Fragments arranged by size: 3202 1526 397 130 111 89 76 SmlI C'TyrA_G Cuts at: 970 1033 1363 1477 2686 3601 4315 4577 970 Size: 63 330 114 1209 915 714 262 1924 Fragments arranged by size: 1924 1209 915 714 330 262 114 63 SpeI A'CTAG_T Cuts at: 67 67 Size: 5531 SphI G_CATG'C Cuts at: 2305 2584 3084 2305 Size: 279 500 4752 Fragments arranged by size: 4752 500 279 StuI AGG'CCT Cuts at: 1322 2101 1322 Size: 779 4752 StyI C'CwwG_G Cuts at: 107 179 311 1539 1784 2665 3019 107 Size: 72 132 1228 245 881 354 2619 Fragments arranged by size: 2619 1228 881 354 245 132 72 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1999 2126 2517 3114 3247 3706 3915 1999 Size: 127 391 597 133 459 209 3615 Fragments arranged by size: 3615 597 459 391 209 133 127 TatI w'GTAC_w Cuts at: 938 1115 1925 2276 2414 5046 938 Size: 177 810 351 138 2632 1423 Fragments arranged by size: 2632 1423 810 351 177 138 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 400 432 1333 1365 5048 5080 400 Size: 32 901 32 3683 32 851 Fragments arranged by size: 3683 901 851 32 32 32 Tth111I GACn'n_nGTC Cuts at: 2113 2356 3328 2113 Size: 243 972 4316 Fragments arranged by size: 4316 972 243 XbaI T'CTAG_A Cuts at: 2562 2562 Size: 5531 XcmI CCAnnnn_n'nnnnTGG Cuts at: 1320 1413 3026 1320 Size: 93 1613 3825 Fragments arranged by size: 3825 1613 93 XhoI C'TCGA_G Cuts at: 1477 1477 Size: 5531 XmaI C'CCGG_G Cuts at: 222 298 1824 1913 2024 2421 2551 222 Size: 76 1526 89 111 397 130 3202 Fragments arranged by size: 3202 1526 397 130 111 89 76 ZraI GAC'GTC Cuts at: 2136 2372 2136 Size: 236 5295 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflIII AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI FspAI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PflMI PmeI PmlI PpiI PpuMI PshAI PspOMI PspXI PstI PvuI PvuII RsrII SacI SacII SalI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI ZraI Enzymes that do not cut: AflII AgeI AloI AscI AvrII BaeI BfrBI BmtI BsiWI BsmBI BspEI BssHII BstXI BstZ17I ClaI CspCI DraIII EcoRV FseI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PfoI PsiI PsrI SanDI SgrAI SnaBI SrfI SspI SwaI XmnI