FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7050, 504 aa
  1>>>pF1KB7050 504 - 504 aa - 504 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2028+/-0.000792; mu= 8.1684+/- 0.048
 mean_var=208.5540+/-42.210, 0's: 0 Z-trim(116.2): 17  B-trim: 0 in 0/51
 Lambda= 0.088811
 statistics sampled from 16827 (16838) to 16827 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.517), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(32554)
CCDS6514.1 DMRTA1 gene_id:63951|Hs108|chr9         ( 504) 3410 449.1 5.4e-126
CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1        ( 542)  513 77.9 3.1e-14
CCDS6442.1 DMRT1 gene_id:1761|Hs108|chr9           ( 373)  435 67.8 2.4e-11


>>CCDS6514.1 DMRTA1 gene_id:63951|Hs108|chr9              (504 aa)
 initn: 3410 init1: 3410 opt: 3410  Z-score: 2375.4  bits: 449.1 E(32554): 5.4e-126
Smith-Waterman score: 3410; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KB7 MERSQCGSRDRGVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MERSQCGSRDRGVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AAAAAAATSGSGGCPPAPGLESGVGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AAAAAAATSGSGGCPPAPGLESGVGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLCSGLSWPPGGRASGGGGRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLCSGLSWPPGGRASGGGGRAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 NPQSTGGPAAGAALGLGALRQASGSATPAFEVFQQDYPEEKQEQKESKCESCQNGQEELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NPQSTGGPAAGAALGLGALRQASGSATPAFEVFQQDYPEEKQEQKESKCESCQNGQEELI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SKSHQLYLGSSSRSNGVIGKQSIGSSISEYSNKPDSILSPHPGEQSGGEESPRSLSSSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SKSHQLYLGSSSRSNGVIGKQSIGSSISEYSNKPDSILSPHPGEQSGGEESPRSLSSSDL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ESGNESEWVKDLTATKASLPTVSSRPRDPLDILTKIFPNYRRSRLEGILRFCKGDVVQAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ESGNESEWVKDLTATKASLPTVSSRPRDPLDILTKIFPNYRRSRLEGILRFCKGDVVQAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 EQVLNGKEHKPDNRNLANSEELENTAFQRASSFSLAGIGFGTLGNKSAFSPLQTTSASYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EQVLNGKEHKPDNRNLANSEELENTAFQRASSFSLAGIGFGTLGNKSAFSPLQTTSASYG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GDSSLYGVNPRVGISPLRLAYSSAGRGLSGFMSPYLTPGLVPTLPFRPALDYAFSGMIRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GDSSLYGVNPRVGISPLRLAYSSAGRGLSGFMSPYLTPGLVPTLPFRPALDYAFSGMIRD
              430       440       450       460       470       480

              490       500    
pF1KB7 SSYLSSKDSITCGRLYFRPNQDNP
       ::::::::::::::::::::::::
CCDS65 SSYLSSKDSITCGRLYFRPNQDNP
              490       500    

>>CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1             (542 aa)
 initn: 956 init1: 462 opt: 513  Z-score: 369.0  bits: 77.9 E(32554): 3.1e-14
Smith-Waterman score: 941; 40.5% identity (59.9% similar) in 516 aa overlap (28-478:8-509)

               10        20        30        40        50        60
pF1KB7 MERSQCGSRDRGVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA
                                  :  :. :  . .    ::.     :.   ::::
CCDS44                     MELRSELPSVPGAATAAAATATGPPV----ASVASVAAAA
                                   10        20            30      

               70        80        90       100       110       120
pF1KB7 AAAAAAATSGSGGCPPAPGLESGVGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRD
       ::::.  .: .::   .: :   .  ..  ::::::::::::::::::::::::.:::.:
CCDS44 AAAASLPVSVAGGLLRGPPL---LLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKD
         40        50           60        70        80        90   

              130       140       150       160                    
pF1KB7 CACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLCS--GLSW-------PP---
       : ::::::::::::::::::::::::::::.::: :: :  .  ::.        ::   
CCDS44 CLCAKCTLIAERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPPRPA
           100       110       120       130       140       150   

          170         180       190       200       210       220  
pF1KB7 ----GG--RASGGGGRAENPQSTGGPAAGAALGLGALRQASGSATPAFEVFQQDYPEEKQ
           :.   :.:::  :  : .::: ::::. . . :.. .      ... .   :    
CCDS44 YEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPP
           160       170       180       190       200       210   

            230       240       250       260       270       280  
pF1KB7 EQKESKCESCQNGQEELISKSHQLYLGSSSRSNGVIGKQSIGSSISEYSNKPDSILSPHP
        .  :  .. ..:     ..: ..  ::.:. ::  :..  :: ... :..  .      
CCDS44 VKPLSP-DGADSGPG---TSSPEVRPGSGSE-NGD-GESFSGSPLARASKEAGGSCPGSA
            220          230       240         250       260       

            290        300       310       320        330       340
pF1KB7 GEQSGGEE-SPRSLSSSDLESGNESEWVKDLTATKASLPTVSS-RPRDPLDILTKIFPNY
       :  .:::: :: : :    :::.:..  .  .:   .:   :. : : ::::::..::..
CCDS44 GPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGH
       270       280       290       300       310       320       

              350       360                 370       380       390
pF1KB7 RRSRLEGILRFCKGDVVQAIEQVLN----------GKEHKPDNRNLANSEELENTAFQRA
       ::. :: .:. : ::::::::::::          :    ::.  .. .   ...  .:.
CCDS44 RRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWPSRV
       330       340       350       360       370       380       

                                              400       410        
pF1KB7 SSFS----------------------------LAGI----GFGTLGNKSAFSPLQTTSAS
       .. .                            :::     ..:.:...::::::: ... 
CCDS44 DAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLLAGAMAPGALGSLSSRSAFSPLQPNASH
       390       400       410       420       430       440       

      420       430       440          450       460       470     
pF1KB7 YGGDSSLYGVNPRVGISPLRLAYSSAG---RGLSGFMSPYLTPGLVPTLPFRPALDYAFS
       .:.:.. : ..  .:.::::::::.:.   :::. ::.:: : :::::: ::: .:::::
CCDS44 FGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGLA-FMAPYSTAGLVPTLGFRPPMDYAFS
       450       460       470       480        490       500      

         480       490       500           
pF1KB7 GMIRDSSYLSSKDSITCGRLYFRPNQDNP       
        ..                                 
CCDS44 DLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPEKQ
        510       520       530       540  

>>CCDS6442.1 DMRT1 gene_id:1761|Hs108|chr9                (373 aa)
 initn: 442 init1: 407 opt: 435  Z-score: 317.1  bits: 67.8 E(32554): 2.4e-11
Smith-Waterman score: 435; 57.9% identity (71.4% similar) in 126 aa overlap (28-150:10-129)

               10        20        30        40        50        60
pF1KB7 MERSQCGSRDRGVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA
                                  :  :: :   : .  :::   :  . : .:..:
CCDS64                   MPNDEAFSKPSTPSEA---PHAPGVPPQG-RAGG-FGKASGA
                                 10           20         30        

               70        80        90          100       110       
pF1KB7 AAAAAAATSGSGGCPPAPGLESGVGAVGCGY---PRTPKCARCRNHGVVSALKGHKRFCR
        ..::...: .::   . :  ::.. .: :    :: :::::::::: .: :::::::: 
CCDS64 LVGAASGSS-AGGSSRGGGSGSGASDLGAGSKKSPRLPKCARCRNHGYASPLKGHKRFCM
        40         50        60        70        80        90      

       120       130       140       150       160       170       
pF1KB7 WRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLCSGLSWPPGGRASGGGG
       :::: : ::.:::::::::::::::::::::::                           
CCDS64 WRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEELGISHPIPLPSAAELLVKRENNGSNP
        100       110       120       130       140       150      

       180       190       200       210       220       230       
pF1KB7 RAENPQSTGGPAAGAALGLGALRQASGSATPAFEVFQQDYPEEKQEQKESKCESCQNGQE
                                                                   
CCDS64 CLMTECSGTSQPPPASVPTTAASEGRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSFYQP
        160       170       180       190       200       210      




504 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:14:49 2016 done: Fri Nov  4 04:14:50 2016
 Total Scan time:  4.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]