FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7064, 674 aa
  1>>>pF1KB7064 674 - 674 aa - 674 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3564+/-0.000327; mu= -3.2018+/- 0.021
 mean_var=255.3756+/-50.497, 0's: 0 Z-trim(124.4): 41  B-trim: 95 in 2/56
 Lambda= 0.080257
 statistics sampled from 45912 (45958) to 45912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.539), width:  16
 Scan time: 11.800

The best scores are:                                      opt bits E(85289)
NP_055145 (OMIM: 611048) protein phosphatase 1 reg ( 674) 4653 551.8 2.9e-156
NP_005372 (OMIM: 164035) nucleolin [Homo sapiens]  ( 710)  262 43.4  0.0035


>>NP_055145 (OMIM: 611048) protein phosphatase 1 regulat  (674 aa)
 initn: 4653 init1: 4653 opt: 4653  Z-score: 2926.3  bits: 551.8 E(85289): 2.9e-156
Smith-Waterman score: 4653; 100.0% identity (100.0% similar) in 674 aa overlap (1-674:1-674)

               10        20        30        40        50        60
pF1KB7 MAPGQAPHQATPWRDAHPFFLLSPVMGLLSRAWSRLRGLGPLEPWLVEAVKGAALVEAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAPGQAPHQATPWRDAHPFFLLSPVMGLLSRAWSRLRGLGPLEPWLVEAVKGAALVEAGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EGEARTPLAIPHTPWGRRPEEEAEDSGGPGEDRETLGLKTSSSLPEAWGLLDDDDGMYGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EGEARTPLAIPHTPWGRRPEEEAEDSGGPGEDRETLGLKTSSSLPEAWGLLDDDDGMYGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 REATSVPRGQGSQFADGQRAPLSPSLLIRTLQGSDKNPGEEKAEEEGVAEEEGVNKFSYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 REATSVPRGQGSQFADGQRAPLSPSLLIRTLQGSDKNPGEEKAEEEGVAEEEGVNKFSYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSHRECCPAVEEEDDEEAVKKEAHRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSHRECCPAVEEEDDEEAVKKEAHRTSTSALSPGSKPSTWVSCPGEEENQATEDKRTERS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KGARKTSVSPRSSGSDPRSWEYRSGEASEEKEEKAHKETGKGEAAPGPQSSAPAQRPQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KGARKTSVSPRSSGSDPRSWEYRSGEASEEKEEKAHKETGKGEAAPGPQSSAPAQRPQLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SWWCQPSDEEEGEVKALGAAEKDGEAECPPCIPPPSAFLKAWVYWPGEDTEEEEDEEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SWWCQPSDEEEGEVKALGAAEKDGEAECPPCIPPPSAFLKAWVYWPGEDTEEEEDEEEDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 DSDSGSDEEEGEAEASSSTPATGVFLKSWVYQPGEDTEEEEDEDSDTGSAEDEREAETSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DSDSGSDEEEGEAEASSSTPATGVFLKSWVYQPGEDTEEEEDEDSDTGSAEDEREAETSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 STPPASAFLKAWVYRPGEDTEEEEDEDVDSEDKEDDSEAALGEAESDPHPSHPDQRAHFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 STPPASAFLKAWVYRPGEDTEEEEDEDVDSEDKEDDSEAALGEAESDPHPSHPDQRAHFR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 GWGYRPGKETEEEEAAEDWGEAEPCPFRVAIYVPGEKPPPPWAPPRLPLRLQRRLKRPET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GWGYRPGKETEEEEAAEDWGEAEPCPFRVAIYVPGEKPPPPWAPPRLPLRLQRRLKRPET
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 PTHDPDPETPLKARKVRFSEKVTVHFLAVWAGPAQAARQGPWEQLARDRSRFARRITQAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PTHDPDPETPLKARKVRFSEKVTVHFLAVWAGPAQAARQGPWEQLARDRSRFARRITQAQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 EELSPCLTPAARARAWARLRNPPLAPIPALTQTLPSSSVPSSPVQTTPLSQAVATPSRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EELSPCLTPAARARAWARLRNPPLAPIPALTQTLPSSSVPSSPVQTTPLSQAVATPSRSS
              610       620       630       640       650       660

              670    
pF1KB7 AAAAAALDLSGRRG
       ::::::::::::::
NP_055 AAAAAALDLSGRRG
              670    

>>NP_005372 (OMIM: 164035) nucleolin [Homo sapiens]       (710 aa)
 initn: 599 init1: 182 opt: 262  Z-score: 178.2  bits: 43.4 E(85289): 0.0035
Smith-Waterman score: 266; 26.6% identity (52.8% similar) in 305 aa overlap (176-476:16-280)

         150       160       170       180       190       200     
pF1KB7 LLIRTLQGSDKNPGEEKAEEEGVAEEEGVNKFSYPPSHRECCPAVEEEDDEEAVKKEAHR
                                     :.. ::.. :     :. .:::  . :   
NP_005                MVKLAKAGKNQGDPKKMAPPPKEVE-----EDSEDEEMSEDEEDD
                              10        20             30        40

         210       220       230       240       250        260    
pF1KB7 TSTSALSPGSKPSTWVSCPGEEENQATEDKRTERSKGARKTSVSP-RSSGSDPRSWEYRS
       .:   .   .: .  ..  . ..  ..  :..  .  :.:..:.: ..... : .     
NP_005 SSGEEVVIPQKKGKKAAATSAKKVVVSPTKKVAVATPAKKAAVTPGKKAAATPAKKTVTP
               50        60        70        80        90       100

          270       280        290         300       310       320 
pF1KB7 GEASEEKEEKAHKETGKGEAA-PGPQSSA-PAQRPQL-KSWWCQPSDEEEGEVKALGAAE
       ..:     .:.    ::. .: :: ...: ::.  .  :.   . ::::: . .     .
NP_005 AKAVTTPGKKG-ATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEED
              110        120       130       140       150         

             330       340       350       360       370       380 
pF1KB7 KDGEAECPPCIPPPSAFLKAWVYWPGEDTEEEEDEEEDEDSDSGSDEEEGEAEASSSTPA
        . : :    : :  : .:: .  :. . :..::.:.:::.:. ..:...: ::  .:::
NP_005 DEDEDEDEDEIEP--AAMKAAAAAPASEDEDDEDDEDDEDDDD-DEEDDSEEEAMETTPA
     160       170         180       190       200        210      

             390       400       410       420       430       440 
pF1KB7 TGVFLKSWVYQPGEDTEEEEDEDSDTGSAEDEREAETSASTPPASAFLKAWVYRPGEDTE
        :    . :   .... :.:::. :    :::                        .: .
NP_005 KGKKAAKVVPVKAKNVAEDEDEEEDD---EDE------------------------DDDD
        220       230       240                                    

             450       460       470       480       490       500 
pF1KB7 EEEDEDVDSEDKEDDSEAALGEAESDPHPSHPDQRAHFRGWGYRPGKETEEEEAAEDWGE
       .:.::: :.:: :.. :    : : .:    : .:                         
NP_005 DEDDEDDDDEDDEEEEE----EEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTT
     250       260           270       280       290       300     

             510       520       530       540       550       560 
pF1KB7 AEPCPFRVAIYVPGEKPPPPWAPPRLPLRLQRRLKRPETPTHDPDPETPLKARKVRFSEK
                                                                   
NP_005 AFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALE
         310       320       330       340       350       360     




674 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:10:12 2016 done: Sat Nov  5 01:10:13 2016
 Total Scan time: 11.800 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]