Result of FASTA (omim) for
pF1KB7083
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7083, 126 aa
1>>>pF1KB7083 126 - 126 aa - 126 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3913+/-0.000322; mu= 11.3313+/- 0.020
mean_var=74.5756+/-14.545, 0's: 0 Z-trim(117.2): 28 B-trim: 751 in 2/56
Lambda= 0.148517
statistics sampled from 28916 (28944) to 28916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.339), width: 16
Scan time: 4.100
The best scores are: opt bits E(85289)
NP_066407 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 787 177.0 7.3e-45
NP_619790 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 787 177.0 7.3e-45
XP_005249096 (OMIM: 602799) PREDICTED: histone H2B ( 150) 787 177.0 8.4e-45
NP_003511 (OMIM: 602801) histone H2B type 1-N [Hom ( 126) 784 176.3 1.1e-44
NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/ ( 126) 782 175.9 1.5e-44
NP_066406 (OMIM: 602803) histone H2B type 1-B [Hom ( 126) 782 175.9 1.5e-44
NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/ ( 126) 782 175.9 1.5e-44
NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/ ( 126) 782 175.9 1.5e-44
NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/ ( 126) 782 175.9 1.5e-44
NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/ ( 126) 782 175.9 1.5e-44
NP_003519 (OMIM: 601831) histone H2B type 2-E [Hom ( 126) 781 175.7 1.8e-44
NP_542160 (OMIM: 615045) histone H2B type 1-K [Hom ( 126) 778 175.0 2.8e-44
NP_003515 (OMIM: 602806) histone H2B type 1-H [Hom ( 126) 778 175.0 2.8e-44
NP_001299582 (OMIM: 615045) histone H2B type 1-K [ ( 126) 778 175.0 2.8e-44
NP_003518 (OMIM: 602808) histone H2B type 1-O [Hom ( 126) 777 174.8 3.2e-44
NP_066402 (OMIM: 615044) histone H2B type 1-J [Hom ( 126) 777 174.8 3.2e-44
NP_003512 (OMIM: 602802) histone H2B type 1-M [Hom ( 126) 771 173.5 7.8e-44
NP_778225 (OMIM: 615046) histone H2B type 3-B [Hom ( 126) 765 172.2 1.9e-43
NP_003510 (OMIM: 602800) histone H2B type 1-L [Hom ( 126) 760 171.2 4e-43
NP_733759 (OMIM: 609904) histone H2B type 1-A [Hom ( 127) 667 151.2 4e-37
NP_001002916 (OMIM: 300507) histone H2B type W-T [ ( 175) 297 72.1 3.8e-13
>>NP_066407 (OMIM: 602799) histone H2B type 1-D [Homo sa (126 aa)
initn: 787 init1: 787 opt: 787 Z-score: 926.4 bits: 177.0 E(85289): 7.3e-45
Smith-Waterman score: 787; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_066 KYTSSK
>>NP_619790 (OMIM: 602799) histone H2B type 1-D [Homo sa (126 aa)
initn: 787 init1: 787 opt: 787 Z-score: 926.4 bits: 177.0 E(85289): 7.3e-45
Smith-Waterman score: 787; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_619 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_619 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_619 KYTSSK
>>XP_005249096 (OMIM: 602799) PREDICTED: histone H2B typ (150 aa)
initn: 787 init1: 787 opt: 787 Z-score: 925.4 bits: 177.0 E(85289): 8.4e-45
Smith-Waterman score: 787; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:25-150)
10 20 30
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKE
::::::::::::::::::::::::::::::::::::
XP_005 MNRASAGVIIFSGVCNSVLTINATMPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ
70 80 90 100 110 120
100 110 120
pF1KB7 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK
::::::::::::::::::::::::::::::
XP_005 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK
130 140 150
>>NP_003511 (OMIM: 602801) histone H2B type 1-N [Homo sa (126 aa)
initn: 784 init1: 784 opt: 784 Z-score: 923.0 bits: 176.3 E(85289): 1.1e-44
Smith-Waterman score: 784; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPSKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_003 KYTSSK
>>NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 782 init1: 782 opt: 782 Z-score: 920.7 bits: 175.9 E(85289): 1.5e-44
Smith-Waterman score: 782; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_003 KYTSSK
>>NP_066406 (OMIM: 602803) histone H2B type 1-B [Homo sa (126 aa)
initn: 782 init1: 782 opt: 782 Z-score: 920.7 bits: 175.9 E(85289): 1.5e-44
Smith-Waterman score: 782; 97.6% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::.:::::::::::::.::::::::::::::::::::.::::::::::::::::::::
NP_066 MPEPSKSAPAPKKGSKKAITKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_066 KYTSSK
>>NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 782 init1: 782 opt: 782 Z-score: 920.7 bits: 175.9 E(85289): 1.5e-44
Smith-Waterman score: 782; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_003 KYTSSK
>>NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 782 init1: 782 opt: 782 Z-score: 920.7 bits: 175.9 E(85289): 1.5e-44
Smith-Waterman score: 782; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_003 KYTSSK
>>NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 782 init1: 782 opt: 782 Z-score: 920.7 bits: 175.9 E(85289): 1.5e-44
Smith-Waterman score: 782; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_003 KYTSSK
>>NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 782 init1: 782 opt: 782 Z-score: 920.7 bits: 175.9 E(85289): 1.5e-44
Smith-Waterman score: 782; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KB7 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KB7 KYTSSK
::::::
NP_003 KYTSSK
126 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:29:12 2016 done: Fri Nov 4 04:29:13 2016
Total Scan time: 4.100 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]