FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7090, 170 aa
  1>>>pF1KB7090 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3584+/-0.000552; mu= 13.1320+/- 0.034
 mean_var=65.2502+/-12.878, 0's: 0 Z-trim(113.3): 10  B-trim: 11 in 1/51
 Lambda= 0.158775
 statistics sampled from 13912 (13919) to 13912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.428), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS2456.2 KCNE4 gene_id:23704|Hs108|chr2          ( 221) 1087 256.6 6.9e-69


>>CCDS2456.2 KCNE4 gene_id:23704|Hs108|chr2               (221 aa)
 initn: 1087 init1: 1087 opt: 1087  Z-score: 1350.2  bits: 256.6 E(32554): 6.9e-69
Smith-Waterman score: 1087; 99.4% identity (100.0% similar) in 170 aa overlap (1-170:52-221)

                                             10        20        30
pF1KB7                               MLKMEPLNSTHPGTAASSSPLESRAAGGGS
                                     ::::::::::::::::::::::::::::::
CCDS24 EQKNPLGLDDLGIQNLGQTVSLAPAVEAASMLKMEPLNSTHPGTAASSSPLESRAAGGGS
              30        40        50        60        70        80 

               40        50        60        70        80        90
pF1KB7 GNGNEYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMKPLPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GNGNEYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMKPLPVV
              90       100       110       120       130       140 

              100       110       120       130       140       150
pF1KB7 SGLRSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADEELEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS24 SGLRSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADDELEET
             150       160       170       180       190       200 

              160       170
pF1KB7 SETPLNESSEGSSENIHQNS
       ::::::::::::::::::::
CCDS24 SETPLNESSEGSSENIHQNS
             210       220 




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:37:11 2016 done: Fri Nov  4 04:37:11 2016
 Total Scan time:  1.840 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]